miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10829 5' -57.4 NC_002794.1 + 100242 0.66 0.871913
Target:  5'- -aGGUCGGCgUCAGCccgcugacccGCUUCCuGCUg -3'
miRNA:   3'- ugCCGGCUGgAGUCGa---------UGAAGGuCGA- -5'
10829 5' -57.4 NC_002794.1 + 99827 0.66 0.879013
Target:  5'- uCGGCCGACCU--GCU-CUUCCAc-- -3'
miRNA:   3'- uGCCGGCUGGAguCGAuGAAGGUcga -5'
10829 5' -57.4 NC_002794.1 + 98977 0.67 0.833405
Target:  5'- gGCGGCgccgUGGCCUCGGUggucggcgGCUUCguCAGCUu -3'
miRNA:   3'- -UGCCG----GCUGGAGUCGa-------UGAAG--GUCGA- -5'
10829 5' -57.4 NC_002794.1 + 96723 0.66 0.864604
Target:  5'- cCGGCCGAgC-CGGCgacgACcgCCGGCg -3'
miRNA:   3'- uGCCGGCUgGaGUCGa---UGaaGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 92730 0.66 0.871913
Target:  5'- uCGcGCUGGCUgcugCAGC-ACUUCCAGUc -3'
miRNA:   3'- uGC-CGGCUGGa---GUCGaUGAAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 83545 0.66 0.879013
Target:  5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3'
miRNA:   3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 76845 0.66 0.8859
Target:  5'- uGCGcGCCGGCCUCGuCgGC--CCAGCUa -3'
miRNA:   3'- -UGC-CGGCUGGAGUcGaUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 75287 0.66 0.899019
Target:  5'- cCGGCCGGCC--GGCgcCUcgCCAGCc -3'
miRNA:   3'- uGCCGGCUGGagUCGauGAa-GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 70236 0.69 0.715093
Target:  5'- gGCGGCCGGCCgccccgCAGCagACgcgCAGCg -3'
miRNA:   3'- -UGCCGGCUGGa-----GUCGa-UGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 68548 0.66 0.89257
Target:  5'- cGCGGCCGACa--AGCUGCgggugUCgccgaCGGCg -3'
miRNA:   3'- -UGCCGGCUGgagUCGAUGa----AG-----GUCGa -5'
10829 5' -57.4 NC_002794.1 + 68491 0.66 0.8859
Target:  5'- gGCGGCCGAgC-CGGCcgUGCgggugaucugCCAGCg -3'
miRNA:   3'- -UGCCGGCUgGaGUCG--AUGaa--------GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 62749 0.68 0.781454
Target:  5'- cGCGGCCG-UCUC-GCUccgGCU-CCGGCUg -3'
miRNA:   3'- -UGCCGGCuGGAGuCGA---UGAaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 62057 0.66 0.879013
Target:  5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3'
miRNA:   3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 60348 0.66 0.8859
Target:  5'- cGCGaCCG-CCUCGGCUACaa-CAGCc -3'
miRNA:   3'- -UGCcGGCuGGAGUCGAUGaagGUCGa -5'
10829 5' -57.4 NC_002794.1 + 60140 1.08 0.003125
Target:  5'- cACGGCCGACCUCAGCUACUUCCAGCUg -3'
miRNA:   3'- -UGCCGGCUGGAGUCGAUGAAGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 59980 0.66 0.899019
Target:  5'- -aGGUCGACCgcuGGCUGCg-CCAGUUc -3'
miRNA:   3'- ugCCGGCUGGag-UCGAUGaaGGUCGA- -5'
10829 5' -57.4 NC_002794.1 + 53307 0.68 0.781454
Target:  5'- aGCGGUCGGCCggcgccgcgagaUCGGCUcgaaccgcACcUCCGGCg -3'
miRNA:   3'- -UGCCGGCUGG------------AGUCGA--------UGaAGGUCGa -5'
10829 5' -57.4 NC_002794.1 + 53232 0.68 0.808124
Target:  5'- aACGGuCCGuCCUCGGCccGCcgcgCCGGCg -3'
miRNA:   3'- -UGCC-GGCuGGAGUCGa-UGaa--GGUCGa -5'
10829 5' -57.4 NC_002794.1 + 51219 0.67 0.830122
Target:  5'- aGCGGCCGGCCggccgaugggaaaCGGUcGCUUCUAGa- -3'
miRNA:   3'- -UGCCGGCUGGa------------GUCGaUGAAGGUCga -5'
10829 5' -57.4 NC_002794.1 + 50227 0.73 0.516294
Target:  5'- aACGGCCGuCCUCGGUcACcUCCuGCa -3'
miRNA:   3'- -UGCCGGCuGGAGUCGaUGaAGGuCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.