Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10829 | 5' | -57.4 | NC_002794.1 | + | 9017 | 0.66 | 0.899019 |
Target: 5'- gACGuGCaGACCaaCAGCUGCaaCCGGCUg -3' miRNA: 3'- -UGC-CGgCUGGa-GUCGAUGaaGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 119631 | 0.66 | 0.899019 |
Target: 5'- uCGGCCGuCgUCAGCacgGCUUCgucgguCAGCg -3' miRNA: 3'- uGCCGGCuGgAGUCGa--UGAAG------GUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 59980 | 0.66 | 0.899019 |
Target: 5'- -aGGUCGACCgcuGGCUGCg-CCAGUUc -3' miRNA: 3'- ugCCGGCUGGag-UCGAUGaaGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 42651 | 0.66 | 0.899019 |
Target: 5'- cGCGGCCGaaGCCgaCGGC-GCcgCCGGCa -3' miRNA: 3'- -UGCCGGC--UGGa-GUCGaUGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 192010 | 0.66 | 0.899019 |
Target: 5'- aGCGGCggUGGCCgCGGCUGCUguuUCUguGGCg -3' miRNA: 3'- -UGCCG--GCUGGaGUCGAUGA---AGG--UCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 101496 | 0.66 | 0.879013 |
Target: 5'- gGCGGCCGGuCCgagCGGUgcgGCacacgCCGGCg -3' miRNA: 3'- -UGCCGGCU-GGa--GUCGa--UGaa---GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 76845 | 0.66 | 0.8859 |
Target: 5'- uGCGcGCCGGCCUCGuCgGC--CCAGCUa -3' miRNA: 3'- -UGC-CGGCUGGAGUcGaUGaaGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 45155 | 0.66 | 0.864604 |
Target: 5'- -aGGCCGACUUCcgAGaCcGCgUCCAGCa -3' miRNA: 3'- ugCCGGCUGGAG--UC-GaUGaAGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 115089 | 0.66 | 0.864604 |
Target: 5'- gGCGGCCGcCCgCAGCcGCgcgUCC-GCg -3' miRNA: 3'- -UGCCGGCuGGaGUCGaUGa--AGGuCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 44950 | 0.66 | 0.864604 |
Target: 5'- gGCGGUguCGACC-CGGgUACaUUCCAGUUc -3' miRNA: 3'- -UGCCG--GCUGGaGUCgAUG-AAGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 137697 | 0.66 | 0.864604 |
Target: 5'- gGCGGaaGGCCUcCGGCUugagCCGGCa -3' miRNA: 3'- -UGCCggCUGGA-GUCGAugaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 96723 | 0.66 | 0.864604 |
Target: 5'- cCGGCCGAgC-CGGCgacgACcgCCGGCg -3' miRNA: 3'- uGCCGGCUgGaGUCGa---UGaaGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 31039 | 0.66 | 0.871913 |
Target: 5'- -gGGCCGACagauagggCAGCggcacgGCggCCAGCUc -3' miRNA: 3'- ugCCGGCUGga------GUCGa-----UGaaGGUCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 100242 | 0.66 | 0.871913 |
Target: 5'- -aGGUCGGCgUCAGCccgcugacccGCUUCCuGCUg -3' miRNA: 3'- ugCCGGCUGgAGUCGa---------UGAAGGuCGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 92730 | 0.66 | 0.871913 |
Target: 5'- uCGcGCUGGCUgcugCAGC-ACUUCCAGUc -3' miRNA: 3'- uGC-CGGCUGGa---GUCGaUGAAGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 35455 | 0.66 | 0.871913 |
Target: 5'- uGCGGCUGAUCgcCAGCUGCcUCUAcCUg -3' miRNA: 3'- -UGCCGGCUGGa-GUCGAUGaAGGUcGA- -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 83545 | 0.66 | 0.879013 |
Target: 5'- uCGGCCaGACCgUCAGUcugGCcgUCCGGUa -3' miRNA: 3'- uGCCGG-CUGG-AGUCGa--UGa-AGGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 62057 | 0.66 | 0.879013 |
Target: 5'- gUGGCCGACgC-CGGCgGCgacgCCGGCg -3' miRNA: 3'- uGCCGGCUG-GaGUCGaUGaa--GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 143574 | 0.66 | 0.879013 |
Target: 5'- uGCGcGCCGuCCUCGGCggcGCUguggucgaacaCCGGCa -3' miRNA: 3'- -UGC-CGGCuGGAGUCGa--UGAa----------GGUCGa -5' |
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10829 | 5' | -57.4 | NC_002794.1 | + | 99827 | 0.66 | 0.879013 |
Target: 5'- uCGGCCGACCU--GCU-CUUCCAc-- -3' miRNA: 3'- uGCCGGCUGGAguCGAuGAAGGUcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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