Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1083 | 5' | -56 | NC_000929.1 | + | 3093 | 0.66 | 0.54987 |
Target: 5'- uGGCGGCgGCGauauuCAcGGCcuGCCGCAGCa- -3' miRNA: 3'- -CCGCUGaCGU-----GUuUCG--CGGUGUCGgu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 5224 | 0.66 | 0.54987 |
Target: 5'- cGGCGAaaGCAUAucccGCGCCAUuGCg- -3' miRNA: 3'- -CCGCUgaCGUGUuu--CGCGGUGuCGgu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 8577 | 0.66 | 0.538773 |
Target: 5'- aGGCG-CUGaACAuauuuauccAGCGCCACAucaccGCCAu -3' miRNA: 3'- -CCGCuGACgUGUu--------UCGCGGUGU-----CGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 18717 | 0.66 | 0.538773 |
Target: 5'- aGCGugUccaGCGCGGucAGUGCCGCuguuGCCu -3' miRNA: 3'- cCGCugA---CGUGUU--UCGCGGUGu---CGGu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 2421 | 0.66 | 0.505976 |
Target: 5'- aGCGAUUGgGC---GCGCCucccguCAGCCAu -3' miRNA: 3'- cCGCUGACgUGuuuCGCGGu-----GUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 30110 | 0.66 | 0.495232 |
Target: 5'- uGGCGGCUGuCGCcuguuuGCGgCGCAcGCCc -3' miRNA: 3'- -CCGCUGAC-GUGuuu---CGCgGUGU-CGGu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 13838 | 0.67 | 0.484593 |
Target: 5'- cGCuGACacCACAAAuGCGCCACGGCa- -3' miRNA: 3'- cCG-CUGacGUGUUU-CGCGGUGUCGgu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 27284 | 0.67 | 0.457461 |
Target: 5'- cGGCGGCUuuuCACAGguauccuuuucagacAGUGgUACAGCCAc -3' miRNA: 3'- -CCGCUGAc--GUGUU---------------UCGCgGUGUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 28423 | 0.67 | 0.453359 |
Target: 5'- cGGCGAaggaUGCACAGGcccGCGCCcugcgugaGCAacGCCGc -3' miRNA: 3'- -CCGCUg---ACGUGUUU---CGCGG--------UGU--CGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 24416 | 0.68 | 0.431165 |
Target: 5'- gGGCGGCUGCAcCAAuaaacaguuuauuGGCGguguaacCCAC-GCCAg -3' miRNA: 3'- -CCGCUGACGU-GUU-------------UCGC-------GGUGuCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 24421 | 0.68 | 0.403861 |
Target: 5'- cGGCGAUaaGguCAGAGCGCa--GGCCAu -3' miRNA: 3'- -CCGCUGa-CguGUUUCGCGgugUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 11503 | 0.69 | 0.37585 |
Target: 5'- cGCGGUUGCACugcccGAGCGCCAUcaacaGGUCAg -3' miRNA: 3'- cCGCUGACGUGu----UUCGCGGUG-----UCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 17533 | 0.71 | 0.270268 |
Target: 5'- cGUGGaUG-ACAGcAGCGCCGCAGCCAu -3' miRNA: 3'- cCGCUgACgUGUU-UCGCGGUGUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 14446 | 0.71 | 0.263219 |
Target: 5'- -cUGACaGCcauACAGAGCGCCACGGCa- -3' miRNA: 3'- ccGCUGaCG---UGUUUCGCGGUGUCGgu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 3877 | 0.72 | 0.22403 |
Target: 5'- aGGCGAC-GuCGCAGGGCGCgggagaGCGGCCc -3' miRNA: 3'- -CCGCUGaC-GUGUUUCGCGg-----UGUCGGu -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 32781 | 0.73 | 0.200745 |
Target: 5'- uGGCGGCuUGUcucgugauuACAAGGCGCCAucCGGUCAu -3' miRNA: 3'- -CCGCUG-ACG---------UGUUUCGCGGU--GUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 30948 | 0.74 | 0.160442 |
Target: 5'- aGGcCGuCUGC-CAGGGUGUUACAGCCAu -3' miRNA: 3'- -CC-GCuGACGuGUUUCGCGGUGUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 27190 | 0.77 | 0.104051 |
Target: 5'- cGGCGACUGaaauccAGUGCCGCAGUCAg -3' miRNA: 3'- -CCGCUGACguguu-UCGCGGUGUCGGU- -5' |
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1083 | 5' | -56 | NC_000929.1 | + | 18807 | 1.11 | 0.000305 |
Target: 5'- aGGCGACUGCACAAAGCGCCACAGCCAg -3' miRNA: 3'- -CCGCUGACGUGUUUCGCGGUGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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