miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10830 3' -48.7 NC_002794.1 + 123690 0.66 0.999721
Target:  5'- gGGAGCAggcgCGACuGGCG-GG-CGUGAGc -3'
miRNA:   3'- gUCUUGUa---GUUG-UCGCaCCuGUACUC- -5'
10830 3' -48.7 NC_002794.1 + 34743 0.66 0.999647
Target:  5'- gCAGAGCGcgCGACGGCGcggugGGACGcGGc -3'
miRNA:   3'- -GUCUUGUa-GUUGUCGCa----CCUGUaCUc -5'
10830 3' -48.7 NC_002794.1 + 53612 0.66 0.999317
Target:  5'- -cGGGCcgCcGCAGCGUcGGACGgacGAGg -3'
miRNA:   3'- guCUUGuaGuUGUCGCA-CCUGUa--CUC- -5'
10830 3' -48.7 NC_002794.1 + 94045 0.67 0.999159
Target:  5'- gAGAGCggCGGCGGUGcggGGGCGgcgGGGg -3'
miRNA:   3'- gUCUUGuaGUUGUCGCa--CCUGUa--CUC- -5'
10830 3' -48.7 NC_002794.1 + 33093 0.67 0.999159
Target:  5'- cCAGAuCcUCcACGGCGUGaACGUGAGc -3'
miRNA:   3'- -GUCUuGuAGuUGUCGCACcUGUACUC- -5'
10830 3' -48.7 NC_002794.1 + 110151 0.67 0.999142
Target:  5'- gAGAGgGUgAGCAcgucgucGCG-GGGCAUGAGg -3'
miRNA:   3'- gUCUUgUAgUUGU-------CGCaCCUGUACUC- -5'
10830 3' -48.7 NC_002794.1 + 122781 0.67 0.998971
Target:  5'- -cGAGCGgccUCGACGGCGUGGAg----- -3'
miRNA:   3'- guCUUGU---AGUUGUCGCACCUguacuc -5'
10830 3' -48.7 NC_002794.1 + 147224 0.67 0.998747
Target:  5'- cCGGGGCGUUGGC-GCGaUGGGCccGAGa -3'
miRNA:   3'- -GUCUUGUAGUUGuCGC-ACCUGuaCUC- -5'
10830 3' -48.7 NC_002794.1 + 32084 0.67 0.998176
Target:  5'- aAGAACA-CGACGGCGUGcaGCAUGu- -3'
miRNA:   3'- gUCUUGUaGUUGUCGCACc-UGUACuc -5'
10830 3' -48.7 NC_002794.1 + 8754 0.68 0.997399
Target:  5'- -cGGGCGUgucgCGACGGCGUGaagacGGCGUGGGa -3'
miRNA:   3'- guCUUGUA----GUUGUCGCAC-----CUGUACUC- -5'
10830 3' -48.7 NC_002794.1 + 94145 0.68 0.996364
Target:  5'- --cGACcgCGGCGGCGcUGGACgGUGGGg -3'
miRNA:   3'- gucUUGuaGUUGUCGC-ACCUG-UACUC- -5'
10830 3' -48.7 NC_002794.1 + 142404 0.68 0.996364
Target:  5'- gCAGGcgGCGUCGGCGGCGccGGGCGcGAu -3'
miRNA:   3'- -GUCU--UGUAGUUGUCGCa-CCUGUaCUc -5'
10830 3' -48.7 NC_002794.1 + 50134 0.68 0.995732
Target:  5'- -cGAugGUCGACAGCG-GGAUgcgGUGcAGg -3'
miRNA:   3'- guCUugUAGUUGUCGCaCCUG---UAC-UC- -5'
10830 3' -48.7 NC_002794.1 + 88076 0.7 0.991096
Target:  5'- gCGGGGCcgCggUuugaacggGGCGUGGugAUGAGc -3'
miRNA:   3'- -GUCUUGuaGuuG--------UCGCACCugUACUC- -5'
10830 3' -48.7 NC_002794.1 + 95762 0.7 0.991096
Target:  5'- gCGGGGCGgcggccgCGACGGCGgccgGGGCGaGAGg -3'
miRNA:   3'- -GUCUUGUa------GUUGUCGCa---CCUGUaCUC- -5'
10830 3' -48.7 NC_002794.1 + 100384 0.7 0.985078
Target:  5'- --cGACGUCcGCGGCGUGGACGa--- -3'
miRNA:   3'- gucUUGUAGuUGUCGCACCUGUacuc -5'
10830 3' -48.7 NC_002794.1 + 161192 0.7 0.985078
Target:  5'- aUAGAACAguacgCGACuGUGUuucuaGGACAUGGGa -3'
miRNA:   3'- -GUCUUGUa----GUUGuCGCA-----CCUGUACUC- -5'
10830 3' -48.7 NC_002794.1 + 56048 0.71 0.981095
Target:  5'- aAGAGCGUgGGCAG-GUGGAaguuccacucCAUGAGg -3'
miRNA:   3'- gUCUUGUAgUUGUCgCACCU----------GUACUC- -5'
10830 3' -48.7 NC_002794.1 + 122617 0.72 0.964405
Target:  5'- -uGAACGUCAcgcGCGGCuacgggcacgcgGUGGACGUGAu -3'
miRNA:   3'- guCUUGUAGU---UGUCG------------CACCUGUACUc -5'
10830 3' -48.7 NC_002794.1 + 105859 0.72 0.96085
Target:  5'- uGGAcgACGUgAGCGGCGccgaGGACGUGGGg -3'
miRNA:   3'- gUCU--UGUAgUUGUCGCa---CCUGUACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.