Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10830 | 3' | -48.7 | NC_002794.1 | + | 34743 | 0.66 | 0.999647 |
Target: 5'- gCAGAGCGcgCGACGGCGcggugGGACGcGGc -3' miRNA: 3'- -GUCUUGUa-GUUGUCGCa----CCUGUaCUc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 123690 | 0.66 | 0.999721 |
Target: 5'- gGGAGCAggcgCGACuGGCG-GG-CGUGAGc -3' miRNA: 3'- gUCUUGUa---GUUG-UCGCaCCuGUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 53612 | 0.66 | 0.999317 |
Target: 5'- -cGGGCcgCcGCAGCGUcGGACGgacGAGg -3' miRNA: 3'- guCUUGuaGuUGUCGCA-CCUGUa--CUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 32084 | 0.67 | 0.998176 |
Target: 5'- aAGAACA-CGACGGCGUGcaGCAUGu- -3' miRNA: 3'- gUCUUGUaGUUGUCGCACc-UGUACuc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 122781 | 0.67 | 0.998971 |
Target: 5'- -cGAGCGgccUCGACGGCGUGGAg----- -3' miRNA: 3'- guCUUGU---AGUUGUCGCACCUguacuc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 147224 | 0.67 | 0.998747 |
Target: 5'- cCGGGGCGUUGGC-GCGaUGGGCccGAGa -3' miRNA: 3'- -GUCUUGUAGUUGuCGC-ACCUGuaCUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 94045 | 0.67 | 0.999159 |
Target: 5'- gAGAGCggCGGCGGUGcggGGGCGgcgGGGg -3' miRNA: 3'- gUCUUGuaGUUGUCGCa--CCUGUa--CUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 110151 | 0.67 | 0.999142 |
Target: 5'- gAGAGgGUgAGCAcgucgucGCG-GGGCAUGAGg -3' miRNA: 3'- gUCUUgUAgUUGU-------CGCaCCUGUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 33093 | 0.67 | 0.999159 |
Target: 5'- cCAGAuCcUCcACGGCGUGaACGUGAGc -3' miRNA: 3'- -GUCUuGuAGuUGUCGCACcUGUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 50134 | 0.68 | 0.995732 |
Target: 5'- -cGAugGUCGACAGCG-GGAUgcgGUGcAGg -3' miRNA: 3'- guCUugUAGUUGUCGCaCCUG---UAC-UC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 142404 | 0.68 | 0.996364 |
Target: 5'- gCAGGcgGCGUCGGCGGCGccGGGCGcGAu -3' miRNA: 3'- -GUCU--UGUAGUUGUCGCa-CCUGUaCUc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 8754 | 0.68 | 0.997399 |
Target: 5'- -cGGGCGUgucgCGACGGCGUGaagacGGCGUGGGa -3' miRNA: 3'- guCUUGUA----GUUGUCGCAC-----CUGUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 94145 | 0.68 | 0.996364 |
Target: 5'- --cGACcgCGGCGGCGcUGGACgGUGGGg -3' miRNA: 3'- gucUUGuaGUUGUCGC-ACCUG-UACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 100384 | 0.7 | 0.985078 |
Target: 5'- --cGACGUCcGCGGCGUGGACGa--- -3' miRNA: 3'- gucUUGUAGuUGUCGCACCUGUacuc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 161192 | 0.7 | 0.985078 |
Target: 5'- aUAGAACAguacgCGACuGUGUuucuaGGACAUGGGa -3' miRNA: 3'- -GUCUUGUa----GUUGuCGCA-----CCUGUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 95762 | 0.7 | 0.991096 |
Target: 5'- gCGGGGCGgcggccgCGACGGCGgccgGGGCGaGAGg -3' miRNA: 3'- -GUCUUGUa------GUUGUCGCa---CCUGUaCUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 88076 | 0.7 | 0.991096 |
Target: 5'- gCGGGGCcgCggUuugaacggGGCGUGGugAUGAGc -3' miRNA: 3'- -GUCUUGuaGuuG--------UCGCACCugUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 56048 | 0.71 | 0.981095 |
Target: 5'- aAGAGCGUgGGCAG-GUGGAaguuccacucCAUGAGg -3' miRNA: 3'- gUCUUGUAgUUGUCgCACCU----------GUACUC- -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 122617 | 0.72 | 0.964405 |
Target: 5'- -uGAACGUCAcgcGCGGCuacgggcacgcgGUGGACGUGAu -3' miRNA: 3'- guCUUGUAGU---UGUCG------------CACCUGUACUc -5' |
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10830 | 3' | -48.7 | NC_002794.1 | + | 105859 | 0.72 | 0.96085 |
Target: 5'- uGGAcgACGUgAGCGGCGccgaGGACGUGGGg -3' miRNA: 3'- gUCU--UGUAgUUGUCGCa---CCUGUACUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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