miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10830 5' -62.9 NC_002794.1 + 82787 0.66 0.669094
Target:  5'- aACCgaCCGCCGCgUcCAC-GCGCGCCg -3'
miRNA:   3'- -UGGa-GGCGGUGgAcGUGcCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 61816 0.66 0.669094
Target:  5'- cAUCUCCggcgGCCGCCggcgGC-CGGCGuCACUc -3'
miRNA:   3'- -UGGAGG----CGGUGGa---CGuGCCGC-GUGGa -5'
10830 5' -62.9 NC_002794.1 + 93461 0.66 0.669094
Target:  5'- gGCgUcCCGCCGCC-GCACguGGC-CACCUu -3'
miRNA:   3'- -UGgA-GGCGGUGGaCGUG--CCGcGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 58688 0.66 0.669094
Target:  5'- cACUaCCGCCAgCUGCucgggcUGGUGCGCUUc -3'
miRNA:   3'- -UGGaGGCGGUgGACGu-----GCCGCGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 51965 0.66 0.669094
Target:  5'- gGCCUCCGggACCgGCAUcguGGCGCucgGCCg -3'
miRNA:   3'- -UGGAGGCggUGGaCGUG---CCGCG---UGGa -5'
10830 5' -62.9 NC_002794.1 + 152580 0.66 0.66813
Target:  5'- cGCCgcggcggCCGCCAcgucCCUGCggcgcgggcccaaGCGGCGCAaacgcucguCCUg -3'
miRNA:   3'- -UGGa------GGCGGU----GGACG-------------UGCCGCGU---------GGA- -5'
10830 5' -62.9 NC_002794.1 + 59677 0.66 0.666201
Target:  5'- cGCCUgCGCCugcacccgggcuucGCCcucacGCugGuGCGCACCg -3'
miRNA:   3'- -UGGAgGCGG--------------UGGa----CGugC-CGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 16352 0.66 0.659441
Target:  5'- gACgUCggCGCCACCcgcacccgcgUGCACGGCG-GCCg -3'
miRNA:   3'- -UGgAG--GCGGUGG----------ACGUGCCGCgUGGa -5'
10830 5' -62.9 NC_002794.1 + 64252 0.66 0.659441
Target:  5'- aACCcgCCGCCACCcgaccucuucaUGCAggUGGCGCucuacGCCc -3'
miRNA:   3'- -UGGa-GGCGGUGG-----------ACGU--GCCGCG-----UGGa -5'
10830 5' -62.9 NC_002794.1 + 64573 0.66 0.659441
Target:  5'- cGCCUCCaGCgACUcgGCACGGUcCACUUc -3'
miRNA:   3'- -UGGAGG-CGgUGGa-CGUGCCGcGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 80424 0.66 0.659441
Target:  5'- cGCCgggcggggCCGCCGCCg--GCGGC-CGCCg -3'
miRNA:   3'- -UGGa-------GGCGGUGGacgUGCCGcGUGGa -5'
10830 5' -62.9 NC_002794.1 + 77634 0.66 0.659441
Target:  5'- cGCCUCacgguccacauCGcCCACCUGUGCGGCcCGCg- -3'
miRNA:   3'- -UGGAG-----------GC-GGUGGACGUGCCGcGUGga -5'
10830 5' -62.9 NC_002794.1 + 113019 0.66 0.649768
Target:  5'- aGCUUgCCGU--UCUGCGCGGCGCAUUc -3'
miRNA:   3'- -UGGA-GGCGguGGACGUGCCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 107749 0.66 0.649768
Target:  5'- aACgCUUCGCgCGCCgcugGCugGaGCGCGCUc -3'
miRNA:   3'- -UG-GAGGCG-GUGGa---CGugC-CGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 129855 0.66 0.649768
Target:  5'- aACCUCCGUCGCgaacGgGgGGCGCACg- -3'
miRNA:   3'- -UGGAGGCGGUGga--CgUgCCGCGUGga -5'
10830 5' -62.9 NC_002794.1 + 17669 0.66 0.649768
Target:  5'- cGCCaCCGCCGCCgGCccCGGCGgagACCg -3'
miRNA:   3'- -UGGaGGCGGUGGaCGu-GCCGCg--UGGa -5'
10830 5' -62.9 NC_002794.1 + 84090 0.66 0.649768
Target:  5'- cGCCgCCGCCACCcGCcucccCGGacacccCGCGCCg -3'
miRNA:   3'- -UGGaGGCGGUGGaCGu----GCC------GCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 44415 0.66 0.649768
Target:  5'- gACCggCCGgCGCCgaGCGgcucgacgacacCGGCGCGCCc -3'
miRNA:   3'- -UGGa-GGCgGUGGa-CGU------------GCCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 182997 0.66 0.649768
Target:  5'- gGCgCUUCGCCGCggGCGCcccgcGCGCGCCc -3'
miRNA:   3'- -UG-GAGGCGGUGgaCGUGc----CGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 182777 0.66 0.649768
Target:  5'- cGCCcggUCCaCCACCUGC-CaGCGCACg- -3'
miRNA:   3'- -UGG---AGGcGGUGGACGuGcCGCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.