miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10830 5' -62.9 NC_002794.1 + 59874 0.97 0.006308
Target:  5'- cACCUCC-CCACCUGCACGGCGCACCUg -3'
miRNA:   3'- -UGGAGGcGGUGGACGUGCCGCGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 55023 0.79 0.105757
Target:  5'- cGCCgcgCCGCCGCgaGCACGGCGUucACCg -3'
miRNA:   3'- -UGGa--GGCGGUGgaCGUGCCGCG--UGGa -5'
10830 5' -62.9 NC_002794.1 + 194265 0.79 0.11394
Target:  5'- cGCCcgaCGCCGCCUcGCACGGCGCGCg- -3'
miRNA:   3'- -UGGag-GCGGUGGA-CGUGCCGCGUGga -5'
10830 5' -62.9 NC_002794.1 + 100307 0.78 0.125772
Target:  5'- cGCCUCCGCCGCUgGCAcgcgcggcCGGCGCACg- -3'
miRNA:   3'- -UGGAGGCGGUGGaCGU--------GCCGCGUGga -5'
10830 5' -62.9 NC_002794.1 + 192359 0.78 0.143552
Target:  5'- gGCCUCCGCCGCCgccgaccgaGCGCGGgcugaccgccaccgcCGCGCCg -3'
miRNA:   3'- -UGGAGGCGGUGGa--------CGUGCC---------------GCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 58537 0.77 0.156654
Target:  5'- gGCCUUCGCCGCg-GCGCGcGCGCugCUg -3'
miRNA:   3'- -UGGAGGCGGUGgaCGUGC-CGCGugGA- -5'
10830 5' -62.9 NC_002794.1 + 17050 0.77 0.164392
Target:  5'- cCCUCCGCgACCUGUcCgGGCGUACCg -3'
miRNA:   3'- uGGAGGCGgUGGACGuG-CCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 130118 0.76 0.175382
Target:  5'- cGCCUCCGCCuugcgagauauuagACgCUGCGCGGCGCGa-- -3'
miRNA:   3'- -UGGAGGCGG--------------UG-GACGUGCCGCGUgga -5'
10830 5' -62.9 NC_002794.1 + 186958 0.76 0.176643
Target:  5'- gGCCgcuggCCGCCGCCUccaGCAgCGcGCGCACCa -3'
miRNA:   3'- -UGGa----GGCGGUGGA---CGU-GC-CGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 77197 0.75 0.194236
Target:  5'- uCCUCCGCCGCCcGuCGCaGGUGCGCUUg -3'
miRNA:   3'- uGGAGGCGGUGGaC-GUG-CCGCGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 145403 0.75 0.198868
Target:  5'- cGCCg-CGCgGCCUuaaaGCGCGGCGCGCCg -3'
miRNA:   3'- -UGGagGCGgUGGA----CGUGCCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 32293 0.75 0.203595
Target:  5'- cGCCgCCGCCGCC-GCgGCGGCcGCGCCg -3'
miRNA:   3'- -UGGaGGCGGUGGaCG-UGCCG-CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 22551 0.75 0.22349
Target:  5'- gACCgUCCGCCACCgccgacacgGCACGGC-CGCUg -3'
miRNA:   3'- -UGG-AGGCGGUGGa--------CGUGCCGcGUGGa -5'
10830 5' -62.9 NC_002794.1 + 80780 0.74 0.234044
Target:  5'- gACCUgugUCGCCACCUGCGCcGCGUGCUc -3'
miRNA:   3'- -UGGA---GGCGGUGGACGUGcCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 52070 0.74 0.239476
Target:  5'- gGCCaUCGCCGaaUGCGCGGCGCACa- -3'
miRNA:   3'- -UGGaGGCGGUggACGUGCCGCGUGga -5'
10830 5' -62.9 NC_002794.1 + 120967 0.74 0.243341
Target:  5'- gACCUCgGCCcgGCCUGCgaguucguguagcgGCGGCGgGCCa -3'
miRNA:   3'- -UGGAGgCGG--UGGACG--------------UGCCGCgUGGa -5'
10830 5' -62.9 NC_002794.1 + 195211 0.74 0.255827
Target:  5'- aGCC-CCGCCAgCUGCggcagcagcccgcGCGGCGuCACCa -3'
miRNA:   3'- -UGGaGGCGGUgGACG-------------UGCCGC-GUGGa -5'
10830 5' -62.9 NC_002794.1 + 149237 0.74 0.256406
Target:  5'- cGCCgCCGUCGCCgggGuCGCGGCGcCACCa -3'
miRNA:   3'- -UGGaGGCGGUGGa--C-GUGCCGC-GUGGa -5'
10830 5' -62.9 NC_002794.1 + 137657 0.74 0.256406
Target:  5'- gGCCUCCGgCGCCgcugGUGCGGaCGCACg- -3'
miRNA:   3'- -UGGAGGCgGUGGa---CGUGCC-GCGUGga -5'
10830 5' -62.9 NC_002794.1 + 77000 0.73 0.26823
Target:  5'- gACCaCCGUCACCgggaUGCcgcCGGCGCACCUc -3'
miRNA:   3'- -UGGaGGCGGUGG----ACGu--GCCGCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.