miRNA display CGI


Results 21 - 40 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10830 5' -62.9 NC_002794.1 + 106461 0.66 0.649768
Target:  5'- gACCU-CGUCGCCgUGacuCGGCGCAuCCUg -3'
miRNA:   3'- -UGGAgGCGGUGG-ACgu-GCCGCGU-GGA- -5'
10830 5' -62.9 NC_002794.1 + 103783 0.66 0.6488
Target:  5'- cAUCUCCggcgGCUgagcuugaggugcGCCUGCgACGGCgGCGCCg -3'
miRNA:   3'- -UGGAGG----CGG-------------UGGACG-UGCCG-CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 17388 0.66 0.6488
Target:  5'- cCCUCCGCCAUCUccgaccgccgaaGCcaccGCGGCcaucgcggucuccGCGCCg -3'
miRNA:   3'- uGGAGGCGGUGGA------------CG----UGCCG-------------CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 98252 0.66 0.647832
Target:  5'- gGCCacaUCGCCgagGCCUGgugucucgaacaACGGCGCACCg -3'
miRNA:   3'- -UGGa--GGCGG---UGGACg-----------UGCCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 47409 0.66 0.640083
Target:  5'- aGCCgCCGUCggcGCCgucGCGCGGaGCGCCa -3'
miRNA:   3'- -UGGaGGCGG---UGGa--CGUGCCgCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 44590 0.66 0.640083
Target:  5'- aGCCaCCGCCGCCUuCuuGG-GCGCCg -3'
miRNA:   3'- -UGGaGGCGGUGGAcGugCCgCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 126550 0.66 0.640083
Target:  5'- gACCgggaacaCCGUCGCC-GCgGCGGUGCugCUg -3'
miRNA:   3'- -UGGa------GGCGGUGGaCG-UGCCGCGugGA- -5'
10830 5' -62.9 NC_002794.1 + 27413 0.66 0.640083
Target:  5'- gACCggCCGCCcgcguCCgaacGCACGGaCGCACg- -3'
miRNA:   3'- -UGGa-GGCGGu----GGa---CGUGCC-GCGUGga -5'
10830 5' -62.9 NC_002794.1 + 71743 0.66 0.640083
Target:  5'- cGCCgaaggCCGCCGCCgGCucuuccgacCGGUccGCGCCg -3'
miRNA:   3'- -UGGa----GGCGGUGGaCGu--------GCCG--CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 193960 0.66 0.640083
Target:  5'- cACCgCCGCCACCgccgucaccGcCGCGGcCGCuACCg -3'
miRNA:   3'- -UGGaGGCGGUGGa--------C-GUGCC-GCG-UGGa -5'
10830 5' -62.9 NC_002794.1 + 149983 0.66 0.640083
Target:  5'- gACCggcggCCGCUAUCUGC-CG-CGCugCUa -3'
miRNA:   3'- -UGGa----GGCGGUGGACGuGCcGCGugGA- -5'
10830 5' -62.9 NC_002794.1 + 96683 0.66 0.640083
Target:  5'- gGCCgCCGCCcccCCUccGC-CGGCaGCGCCUu -3'
miRNA:   3'- -UGGaGGCGGu--GGA--CGuGCCG-CGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 182524 0.66 0.639114
Target:  5'- aGCa-CCGuCCACCaGCGCGGCagcgacuGCGCCg -3'
miRNA:   3'- -UGgaGGC-GGUGGaCGUGCCG-------CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 185928 0.66 0.639114
Target:  5'- cACCgCCgGCCACCcGCcaggcucGCGGCcGCGCCc -3'
miRNA:   3'- -UGGaGG-CGGUGGaCG-------UGCCG-CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 183538 0.66 0.630393
Target:  5'- cGCC-CCGuCCGCCcgggGaCACuGCGCGCCg -3'
miRNA:   3'- -UGGaGGC-GGUGGa---C-GUGcCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 131243 0.66 0.630393
Target:  5'- gACC-CCGCCGCCggacgccGC-CGGCaccaccgccgGCACCa -3'
miRNA:   3'- -UGGaGGCGGUGGa------CGuGCCG----------CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 75370 0.66 0.630393
Target:  5'- gACCcgCCGCgGCCgGCgGCGGCG-GCCUc -3'
miRNA:   3'- -UGGa-GGCGgUGGaCG-UGCCGCgUGGA- -5'
10830 5' -62.9 NC_002794.1 + 62670 0.66 0.630393
Target:  5'- uCCUCCucgagaaCCGCCUGCG-GGUGCAgCUg -3'
miRNA:   3'- uGGAGGc------GGUGGACGUgCCGCGUgGA- -5'
10830 5' -62.9 NC_002794.1 + 180294 0.66 0.630393
Target:  5'- cGCCgCCGCaacaCGCCgGC-CGGCGCgACCa -3'
miRNA:   3'- -UGGaGGCG----GUGGaCGuGCCGCG-UGGa -5'
10830 5' -62.9 NC_002794.1 + 37261 0.66 0.630393
Target:  5'- cGCuCUCCGUCGgCgggcgcgcggGCGCGGCGUACa- -3'
miRNA:   3'- -UG-GAGGCGGUgGa---------CGUGCCGCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.