miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10830 5' -62.9 NC_002794.1 + 307 0.67 0.601354
Target:  5'- cGCCgggcCCGCCccACCccCACGcGCGCGCCg -3'
miRNA:   3'- -UGGa---GGCGG--UGGacGUGC-CGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 4836 0.69 0.444384
Target:  5'- uUgUUgGCCACCUGCGCGGCcCACg- -3'
miRNA:   3'- uGgAGgCGGUGGACGUGCCGcGUGga -5'
10830 5' -62.9 NC_002794.1 + 8522 0.67 0.601354
Target:  5'- gGCC-CCGCC-CCUGCACGaagucugggaGCagaccguccGCGCCUg -3'
miRNA:   3'- -UGGaGGCGGuGGACGUGC----------CG---------CGUGGA- -5'
10830 5' -62.9 NC_002794.1 + 11072 0.69 0.444384
Target:  5'- gACUUgguaCGCCGCCUGCcucgucguCGGCGcCACCUu -3'
miRNA:   3'- -UGGAg---GCGGUGGACGu-------GCCGC-GUGGA- -5'
10830 5' -62.9 NC_002794.1 + 12178 0.66 0.630393
Target:  5'- cGCCgccgaCGCCGCCgcgGC-CGG-GCGCCg -3'
miRNA:   3'- -UGGag---GCGGUGGa--CGuGCCgCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 14451 0.68 0.54398
Target:  5'- -gCUCCGCgggcgACCgUGUcgaGCGGCGCGCCg -3'
miRNA:   3'- ugGAGGCGg----UGG-ACG---UGCCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 16352 0.66 0.659441
Target:  5'- gACgUCggCGCCACCcgcacccgcgUGCACGGCG-GCCg -3'
miRNA:   3'- -UGgAG--GCGGUGG----------ACGUGCCGCgUGGa -5'
10830 5' -62.9 NC_002794.1 + 16491 0.72 0.311717
Target:  5'- cGCCUCCGCCGCCaccGCcgccgccgucccCGGCGuCGCCa -3'
miRNA:   3'- -UGGAGGCGGUGGa--CGu-----------GCCGC-GUGGa -5'
10830 5' -62.9 NC_002794.1 + 16584 0.69 0.479511
Target:  5'- cACCgCCGCCGCCgucucCGGCGuCGCCa -3'
miRNA:   3'- -UGGaGGCGGUGGacgu-GCCGC-GUGGa -5'
10830 5' -62.9 NC_002794.1 + 17050 0.77 0.164392
Target:  5'- cCCUCCGCgACCUGUcCgGGCGUACCg -3'
miRNA:   3'- uGGAGGCGgUGGACGuG-CCGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 17388 0.66 0.6488
Target:  5'- cCCUCCGCCAUCUccgaccgccgaaGCcaccGCGGCcaucgcggucuccGCGCCg -3'
miRNA:   3'- uGGAGGCGGUGGA------------CG----UGCCG-------------CGUGGa -5'
10830 5' -62.9 NC_002794.1 + 17669 0.66 0.649768
Target:  5'- cGCCaCCGCCGCCgGCccCGGCGgagACCg -3'
miRNA:   3'- -UGGaGGCGGUGGaCGu-GCCGCg--UGGa -5'
10830 5' -62.9 NC_002794.1 + 18258 0.66 0.630393
Target:  5'- gACCggcgaCCGCgAgaUGCGCGGCGCcgaGCCUu -3'
miRNA:   3'- -UGGa----GGCGgUggACGUGCCGCG---UGGA- -5'
10830 5' -62.9 NC_002794.1 + 18681 0.71 0.386584
Target:  5'- gGCUgCCGCCGCCgucuccgGCACGGCgGCGgCg -3'
miRNA:   3'- -UGGaGGCGGUGGa------CGUGCCG-CGUgGa -5'
10830 5' -62.9 NC_002794.1 + 20154 0.67 0.562947
Target:  5'- uACCaCCGCCGCCUG-GCGGCcccaUACCg -3'
miRNA:   3'- -UGGaGGCGGUGGACgUGCCGc---GUGGa -5'
10830 5' -62.9 NC_002794.1 + 20187 0.72 0.299706
Target:  5'- aGCCcgCCGCCcaACCUGCuACGcCGCACCg -3'
miRNA:   3'- -UGGa-GGCGG--UGGACG-UGCcGCGUGGa -5'
10830 5' -62.9 NC_002794.1 + 22551 0.75 0.22349
Target:  5'- gACCgUCCGCCACCgccgacacgGCACGGC-CGCUg -3'
miRNA:   3'- -UGG-AGGCGGUGGa--------CGUGCCGcGUGGa -5'
10830 5' -62.9 NC_002794.1 + 24011 0.66 0.630393
Target:  5'- gGCCgCCGUCACCgcgGCgccucggcgACGGCGguCCc -3'
miRNA:   3'- -UGGaGGCGGUGGa--CG---------UGCCGCguGGa -5'
10830 5' -62.9 NC_002794.1 + 26635 0.67 0.611021
Target:  5'- cGCgUCCGCgCACCcGgACGGCG-GCCg -3'
miRNA:   3'- -UGgAGGCG-GUGGaCgUGCCGCgUGGa -5'
10830 5' -62.9 NC_002794.1 + 27413 0.66 0.640083
Target:  5'- gACCggCCGCCcgcguCCgaacGCACGGaCGCACg- -3'
miRNA:   3'- -UGGa-GGCGGu----GGa---CGUGCC-GCGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.