miRNA display CGI


Results 1 - 20 of 558 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10831 3' -65.2 NC_002794.1 + 134885 0.66 0.60061
Target:  5'- cCUGCGC-GCGUUguauCGGaCGCGCUCGGg -3'
miRNA:   3'- -GGCGCGuCGCGGu---GCC-GCGCGGGCUg -5'
10831 3' -65.2 NC_002794.1 + 39548 0.66 0.60061
Target:  5'- gCUGUGCGGCcuCUGCGGCGC-CCUGuACc -3'
miRNA:   3'- -GGCGCGUCGc-GGUGCCGCGcGGGC-UG- -5'
10831 3' -65.2 NC_002794.1 + 45809 0.66 0.60061
Target:  5'- cUCGUGUAG-GUCACGuaCGCGCCCGugaGCa -3'
miRNA:   3'- -GGCGCGUCgCGGUGCc-GCGCGGGC---UG- -5'
10831 3' -65.2 NC_002794.1 + 129139 0.66 0.60061
Target:  5'- aCgGCGCGucgagacuGUGUCGCGGCccucGCGgCCGAUg -3'
miRNA:   3'- -GgCGCGU--------CGCGGUGCCG----CGCgGGCUG- -5'
10831 3' -65.2 NC_002794.1 + 77045 0.66 0.60061
Target:  5'- cCCGCuC-GUGCCGCGGacCGCGUCCcGCu -3'
miRNA:   3'- -GGCGcGuCGCGGUGCC--GCGCGGGcUG- -5'
10831 3' -65.2 NC_002794.1 + 148134 0.66 0.60061
Target:  5'- -gGCGCGGgGCCGCcggggcgagGGCG-GUCgCGACg -3'
miRNA:   3'- ggCGCGUCgCGGUG---------CCGCgCGG-GCUG- -5'
10831 3' -65.2 NC_002794.1 + 103801 0.66 0.60061
Target:  5'- uUGaGguGCGCCugcgACGGCG-GCgCCGACg -3'
miRNA:   3'- gGCgCguCGCGG----UGCCGCgCG-GGCUG- -5'
10831 3' -65.2 NC_002794.1 + 183702 0.66 0.60061
Target:  5'- gCGCGCGGCGgCACaGCcacaccgucaGCCCGcACg -3'
miRNA:   3'- gGCGCGUCGCgGUGcCGcg--------CGGGC-UG- -5'
10831 3' -65.2 NC_002794.1 + 105235 0.66 0.60061
Target:  5'- gUGCGCGGCGCCACGcUGCaCuuGuaGCa -3'
miRNA:   3'- gGCGCGUCGCGGUGCcGCGcGggC--UG- -5'
10831 3' -65.2 NC_002794.1 + 16519 0.66 0.60061
Target:  5'- cCCG-GCGuCGCCAccgccgucccCGGCGUcCCCGGCg -3'
miRNA:   3'- -GGCgCGUcGCGGU----------GCCGCGcGGGCUG- -5'
10831 3' -65.2 NC_002794.1 + 21700 0.66 0.60061
Target:  5'- cCCGCcuCGGCGuCCACGGgcgcUGCGUCgCGAUc -3'
miRNA:   3'- -GGCGc-GUCGC-GGUGCC----GCGCGG-GCUG- -5'
10831 3' -65.2 NC_002794.1 + 74009 0.66 0.60061
Target:  5'- cCCaCGCuGCGCCuguuCGGcCGCcacCCCGGCc -3'
miRNA:   3'- -GGcGCGuCGCGGu---GCC-GCGc--GGGCUG- -5'
10831 3' -65.2 NC_002794.1 + 96698 0.66 0.60061
Target:  5'- uCCGCcgGCAGCGCCuucuccuccccCGGC-CGagCCGGCg -3'
miRNA:   3'- -GGCG--CGUCGCGGu----------GCCGcGCg-GGCUG- -5'
10831 3' -65.2 NC_002794.1 + 194711 0.66 0.60061
Target:  5'- aCGCGCAGCacaGCCGC--CGCGUCaCGAa -3'
miRNA:   3'- gGCGCGUCG---CGGUGccGCGCGG-GCUg -5'
10831 3' -65.2 NC_002794.1 + 17625 0.66 0.59967
Target:  5'- cCCGcCGCGGCgagcgaucccgccGCCGCGGC-CGCCg--- -3'
miRNA:   3'- -GGC-GCGUCG-------------CGGUGCCGcGCGGgcug -5'
10831 3' -65.2 NC_002794.1 + 17229 0.66 0.597792
Target:  5'- gCCGC-CAcCGCCgccaccacccuucgACGGCgGCGaCCCGGCu -3'
miRNA:   3'- -GGCGcGUcGCGG--------------UGCCG-CGC-GGGCUG- -5'
10831 3' -65.2 NC_002794.1 + 50645 0.66 0.597792
Target:  5'- gUCGCGaaugagcgaaaacaUGGCgGCCGCGGCGCucGCCgCGAa -3'
miRNA:   3'- -GGCGC--------------GUCG-CGGUGCCGCG--CGG-GCUg -5'
10831 3' -65.2 NC_002794.1 + 57952 0.66 0.594977
Target:  5'- gCUGCGCAGCcuguGCCacccgcugcucuacgACGGCGaG-CCGACg -3'
miRNA:   3'- -GGCGCGUCG----CGG---------------UGCCGCgCgGGCUG- -5'
10831 3' -65.2 NC_002794.1 + 53939 0.66 0.591227
Target:  5'- aCCGagcuCGCAGcCGCCACagagccucGCGCGUCCG-Cu -3'
miRNA:   3'- -GGC----GCGUC-GCGGUGc-------CGCGCGGGCuG- -5'
10831 3' -65.2 NC_002794.1 + 55024 0.66 0.591227
Target:  5'- gCCGCGCcgccGCGagCACGGCGUuCaCCGAg -3'
miRNA:   3'- -GGCGCGu---CGCg-GUGCCGCGcG-GGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.