miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10831 5' -56 NC_002794.1 + 93703 0.66 0.946779
Target:  5'- -gGCCACGCGC-CUGguCGACcuGCUGUUg -3'
miRNA:   3'- ggUGGUGCGCGaGAU--GUUGc-CGACGA- -5'
10831 5' -56 NC_002794.1 + 154358 0.66 0.946779
Target:  5'- gCUcCCGCGCGgUCcaggccGCGGCGGCgGCg -3'
miRNA:   3'- -GGuGGUGCGCgAGa-----UGUUGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 58094 0.66 0.946779
Target:  5'- gCGCC-CGCGCUC---GACcGCUGCg -3'
miRNA:   3'- gGUGGuGCGCGAGaugUUGcCGACGa -5'
10831 5' -56 NC_002794.1 + 194899 0.66 0.946779
Target:  5'- uCCGCgAagcuCGUGCUCgccgacaGCAGCGGCcGCa -3'
miRNA:   3'- -GGUGgU----GCGCGAGa------UGUUGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 63142 0.66 0.946779
Target:  5'- gCCgACCGCGUGCaCUccCAGCuGCUGCa -3'
miRNA:   3'- -GG-UGGUGCGCGaGAu-GUUGcCGACGa -5'
10831 5' -56 NC_002794.1 + 34216 0.66 0.944174
Target:  5'- gCACCugGgaGCgcaaggugcaggagCUGCAcgcGCGGCUGCc -3'
miRNA:   3'- gGUGGugCg-CGa-------------GAUGU---UGCCGACGa -5'
10831 5' -56 NC_002794.1 + 80797 0.66 0.942392
Target:  5'- gCGCCGCGUGCUCcuccACGccCGGCgugaGCUc -3'
miRNA:   3'- gGUGGUGCGCGAGa---UGUu-GCCGa---CGA- -5'
10831 5' -56 NC_002794.1 + 108417 0.66 0.942392
Target:  5'- cCCACCACgGCGCcCaccccGCGAcCGGCgGCa -3'
miRNA:   3'- -GGUGGUG-CGCGaGa----UGUU-GCCGaCGa -5'
10831 5' -56 NC_002794.1 + 103787 0.66 0.941941
Target:  5'- uCCGgCGgcugagcuugaggUGCGC-CUGCGACGGCgGCg -3'
miRNA:   3'- -GGUgGU-------------GCGCGaGAUGUUGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 189224 0.66 0.938249
Target:  5'- gCACCACcCGCUCcgucgugacgaucagACAGCGGCccaGCg -3'
miRNA:   3'- gGUGGUGcGCGAGa--------------UGUUGCCGa--CGa -5'
10831 5' -56 NC_002794.1 + 50715 0.66 0.937777
Target:  5'- gCCGCCuCGCGUUCgccGCccggGGCGGCcGCc -3'
miRNA:   3'- -GGUGGuGCGCGAGa--UG----UUGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 126192 0.66 0.937777
Target:  5'- aCUAUCACGUcaUCUACGugGGCgaggGCc -3'
miRNA:   3'- -GGUGGUGCGcgAGAUGUugCCGa---CGa -5'
10831 5' -56 NC_002794.1 + 59637 0.66 0.937777
Target:  5'- gCACCACaaGCUCUccccggucgccACGGCG-CUGCa -3'
miRNA:   3'- gGUGGUGcgCGAGA-----------UGUUGCcGACGa -5'
10831 5' -56 NC_002794.1 + 105699 0.66 0.937777
Target:  5'- aCCGCCGuCGCcuccGCUCgagGCGaucGCGGCgGCc -3'
miRNA:   3'- -GGUGGU-GCG----CGAGa--UGU---UGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 107219 0.66 0.937777
Target:  5'- gCCGCCgggcgGCGCGCg--ACGGgGGCgGCg -3'
miRNA:   3'- -GGUGG-----UGCGCGagaUGUUgCCGaCGa -5'
10831 5' -56 NC_002794.1 + 194198 0.66 0.937777
Target:  5'- aCCGCCGCGUGgUacgACAcCGGCggGCc -3'
miRNA:   3'- -GGUGGUGCGCgAga-UGUuGCCGa-CGa -5'
10831 5' -56 NC_002794.1 + 184987 0.66 0.937777
Target:  5'- aCGCaGCGCGCgaaGCGGCGGCcGCc -3'
miRNA:   3'- gGUGgUGCGCGagaUGUUGCCGaCGa -5'
10831 5' -56 NC_002794.1 + 54985 0.66 0.937777
Target:  5'- cCCGCCGCG-GCg--ACGGCGGCgacucGCc -3'
miRNA:   3'- -GGUGGUGCgCGagaUGUUGCCGa----CGa -5'
10831 5' -56 NC_002794.1 + 103609 0.66 0.932933
Target:  5'- gCGgCACGCGCUCUugGAgauCUGCUc -3'
miRNA:   3'- gGUgGUGCGCGAGAugUUgccGACGA- -5'
10831 5' -56 NC_002794.1 + 26626 0.66 0.932933
Target:  5'- cCCACCGuccgcgucCGCGCacccggACGGCGGCcgGCUc -3'
miRNA:   3'- -GGUGGU--------GCGCGaga---UGUUGCCGa-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.