miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 3' -55.8 NC_002794.1 + 10919 0.66 0.947472
Target:  5'- aCCUGgUGGUGaGuaAGCUCUaUUUACCGa- -3'
miRNA:   3'- -GGACgACCAC-C--UCGAGA-AGAUGGCgc -5'
10832 3' -55.8 NC_002794.1 + 96516 0.67 0.906272
Target:  5'- gCCU-UUGGgaaGGAGCUgCgccUCUGCCGCGc -3'
miRNA:   3'- -GGAcGACCa--CCUCGA-Ga--AGAUGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 50912 0.67 0.906272
Target:  5'- uCCaGCUGccGGAGCUCggacUCgcCCGCGg -3'
miRNA:   3'- -GGaCGACcaCCUCGAGa---AGauGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 100734 0.68 0.893683
Target:  5'- aCCUGCUGacgcgcgcGGAGCgcgUCUAUCGCu -3'
miRNA:   3'- -GGACGACca------CCUCGagaAGAUGGCGc -5'
10832 3' -55.8 NC_002794.1 + 94974 0.68 0.893683
Target:  5'- gCCgacGCgggGGcUGGAGCUCUgucGCCGCu -3'
miRNA:   3'- -GGa--CGa--CC-ACCUCGAGAagaUGGCGc -5'
10832 3' -55.8 NC_002794.1 + 16284 0.68 0.893683
Target:  5'- cCCUGUUGGcGGAGUcuagcCUggcgGCCGCGg -3'
miRNA:   3'- -GGACGACCaCCUCGa----GAaga-UGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 64276 0.68 0.873151
Target:  5'- -aUGCaGGUGGcGCUCUaCgcccACCGCGg -3'
miRNA:   3'- ggACGaCCACCuCGAGAaGa---UGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 53109 0.7 0.800951
Target:  5'- cCCgGC-GGUuccGGAGCUCgcgUCgACCGCGg -3'
miRNA:   3'- -GGaCGaCCA---CCUCGAGa--AGaUGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 62263 0.71 0.755337
Target:  5'- gCUGCgccUGGUcaagccGGAGCUCggccugCUGCCGCu -3'
miRNA:   3'- gGACG---ACCA------CCUCGAGaa----GAUGGCGc -5'
10832 3' -55.8 NC_002794.1 + 123301 0.71 0.755337
Target:  5'- gCUGCUGGaGGAGaUCUUCgagcagcagggGCCGCa -3'
miRNA:   3'- gGACGACCaCCUCgAGAAGa----------UGGCGc -5'
10832 3' -55.8 NC_002794.1 + 108263 0.71 0.726639
Target:  5'- -gUGUUGGUGGAaCaUUUCUGCCGCa -3'
miRNA:   3'- ggACGACCACCUcGaGAAGAUGGCGc -5'
10832 3' -55.8 NC_002794.1 + 190155 0.72 0.707099
Target:  5'- aCUGCUGGcGGcGGCUCUcCUcgaacacccGCCGCGc -3'
miRNA:   3'- gGACGACCaCC-UCGAGAaGA---------UGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 90778 0.72 0.697232
Target:  5'- gCUGCUGGUGGAcCUgacggUCgACCGCGa -3'
miRNA:   3'- gGACGACCACCUcGAga---AGaUGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 117979 0.73 0.627156
Target:  5'- aCCaGCUGGUGGuacAGCaggggCUGCCGCGg -3'
miRNA:   3'- -GGaCGACCACC---UCGagaa-GAUGGCGC- -5'
10832 3' -55.8 NC_002794.1 + 47108 0.74 0.587017
Target:  5'- uCCUcaaGgaGGUGGAGUUCcgCUGCCGCc -3'
miRNA:   3'- -GGA---CgaCCACCUCGAGaaGAUGGCGc -5'
10832 3' -55.8 NC_002794.1 + 59084 1.11 0.002906
Target:  5'- cCCUGCUGGUGGAGCUCUUCUACCGCGa -3'
miRNA:   3'- -GGACGACCACCUCGAGAAGAUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.