miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 100771 0.66 0.825204
Target:  5'- gGUCGCGgaguacacgcGCCugCGGuucgcGGCCG-CUUCuGCg -3'
miRNA:   3'- -CAGCGC----------CGGugGCU-----CCGGCuGAAG-CG- -5'
10832 5' -60.3 NC_002794.1 + 16708 0.66 0.825204
Target:  5'- aGUCGCucGCCGuCCGAGgagucugcGCCGGCUcCGUc -3'
miRNA:   3'- -CAGCGc-CGGU-GGCUC--------CGGCUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 51219 0.66 0.825204
Target:  5'- --aGCGGCCgGCC--GGCCGAUgggaaacggUCGCu -3'
miRNA:   3'- cagCGCCGG-UGGcuCCGGCUGa--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 66869 0.66 0.825204
Target:  5'- -cCGCGGCgugcggcugagcCAUCGcGGCCGACUccCGUu -3'
miRNA:   3'- caGCGCCG------------GUGGCuCCGGCUGAa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 115331 0.66 0.825204
Target:  5'- -cCGCGGCguCCG-GGCCG-CUcgGCa -3'
miRNA:   3'- caGCGCCGguGGCuCCGGCuGAagCG- -5'
10832 5' -60.3 NC_002794.1 + 88970 0.66 0.825204
Target:  5'- -gCGUGGCCGCCGGaucgucgcGGCaGA--UCGCg -3'
miRNA:   3'- caGCGCCGGUGGCU--------CCGgCUgaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 129506 0.66 0.825204
Target:  5'- -cCGUGucGCCGCCGcGGUCGGCg-CGCu -3'
miRNA:   3'- caGCGC--CGGUGGCuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 127827 0.66 0.825204
Target:  5'- cGUCGuCGGC--CCGA-GCCGACUgUUGCu -3'
miRNA:   3'- -CAGC-GCCGguGGCUcCGGCUGA-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 61940 0.66 0.825204
Target:  5'- aUCGCGcucgcccccaccGCCcCCGAGGCCaGCggcCGCc -3'
miRNA:   3'- cAGCGC------------CGGuGGCUCCGGcUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 187477 0.66 0.825204
Target:  5'- -gCGCGcGCCggGCCGAGGacgaGGCcgCGCa -3'
miRNA:   3'- caGCGC-CGG--UGGCUCCgg--CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 121180 0.66 0.820343
Target:  5'- --aGCgGGCUccgcacgacgauccgAUCGGGGUCGACUUCGg -3'
miRNA:   3'- cagCG-CCGG---------------UGGCUCCGGCUGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 134177 0.66 0.820343
Target:  5'- -gCGCggauGGCCACCucguaucggcuggugGGGGCCGuCggUCGCc -3'
miRNA:   3'- caGCG----CCGGUGG---------------CUCCGGCuGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 44718 0.66 0.817072
Target:  5'- -cCGCGGCgACgucGGCCGGCgcCGCc -3'
miRNA:   3'- caGCGCCGgUGgcuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 192413 0.66 0.817072
Target:  5'- aGUCGaaacGCCGcgacggguCCGcGGCCGGCgcgUCGCg -3'
miRNA:   3'- -CAGCgc--CGGU--------GGCuCCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 23965 0.66 0.817072
Target:  5'- cUC-CGaGCCAgcggCGAGGCCGGCgccaccgUCGCu -3'
miRNA:   3'- cAGcGC-CGGUg---GCUCCGGCUGa------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 57415 0.66 0.817072
Target:  5'- -gCGUGGCCGgCGugcuGGUCGGCacggCGCc -3'
miRNA:   3'- caGCGCCGGUgGCu---CCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 63163 0.66 0.817072
Target:  5'- -cUGCuGCacgGCCGAGGCCGcgaaGCggUCGCg -3'
miRNA:   3'- caGCGcCGg--UGGCUCCGGC----UGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 134680 0.66 0.817072
Target:  5'- -aCGCGGCCGCgCuuGGCuCGAC--CGCc -3'
miRNA:   3'- caGCGCCGGUG-GcuCCG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 143035 0.66 0.817072
Target:  5'- gGUCGacgugcagGGCCGCCagguuGAGGCCGuaGCgccCGCg -3'
miRNA:   3'- -CAGCg-------CCGGUGG-----CUCCGGC--UGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 19971 0.66 0.814603
Target:  5'- -cUGCGGCCGCCcuucGGGCUGuccguccugguggcGCUgCGCa -3'
miRNA:   3'- caGCGCCGGUGGc---UCCGGC--------------UGAaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.