miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 127827 0.66 0.825204
Target:  5'- cGUCGuCGGC--CCGA-GCCGACUgUUGCu -3'
miRNA:   3'- -CAGC-GCCGguGGCUcCGGCUGA-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 61940 0.66 0.825204
Target:  5'- aUCGCGcucgcccccaccGCCcCCGAGGCCaGCggcCGCc -3'
miRNA:   3'- cAGCGC------------CGGuGGCUCCGGcUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 187477 0.66 0.825204
Target:  5'- -gCGCGcGCCggGCCGAGGacgaGGCcgCGCa -3'
miRNA:   3'- caGCGC-CGG--UGGCUCCgg--CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 100771 0.66 0.825204
Target:  5'- gGUCGCGgaguacacgcGCCugCGGuucgcGGCCG-CUUCuGCg -3'
miRNA:   3'- -CAGCGC----------CGGugGCU-----CCGGCuGAAG-CG- -5'
10832 5' -60.3 NC_002794.1 + 143035 0.66 0.817072
Target:  5'- gGUCGacgugcagGGCCGCCagguuGAGGCCGuaGCgccCGCg -3'
miRNA:   3'- -CAGCg-------CCGGUGG-----CUCCGGC--UGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 134680 0.66 0.817072
Target:  5'- -aCGCGGCCGCgCuuGGCuCGAC--CGCc -3'
miRNA:   3'- caGCGCCGGUG-GcuCCG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 112247 0.66 0.800362
Target:  5'- -cCGCGaacGCCGCCGgcGGGaCCGGCgucUCGUc -3'
miRNA:   3'- caGCGC---CGGUGGC--UCC-GGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 180894 0.66 0.800362
Target:  5'- gGUCuCGGCCGCgGAcucGGCCG-CggucUCGCc -3'
miRNA:   3'- -CAGcGCCGGUGgCU---CCGGCuGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 126248 0.66 0.800362
Target:  5'- aUCGUGG-CGCgCGAGGUCGGCggcUgGCu -3'
miRNA:   3'- cAGCGCCgGUG-GCUCCGGCUGa--AgCG- -5'
10832 5' -60.3 NC_002794.1 + 112692 0.66 0.80879
Target:  5'- -cCGC-GUCACCGcGGCCaGCUucUCGCg -3'
miRNA:   3'- caGCGcCGGUGGCuCCGGcUGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 49018 0.66 0.80879
Target:  5'- -cCGCGGCgGCCGcGGCgucgucCGGCgcggUCGUc -3'
miRNA:   3'- caGCGCCGgUGGCuCCG------GCUGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 77961 0.66 0.80879
Target:  5'- -cCGCcGUCGCCGA-GCCGACUccucCGCc -3'
miRNA:   3'- caGCGcCGGUGGCUcCGGCUGAa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 107514 0.66 0.80879
Target:  5'- -gUGcCGGUCgacGCCGAcGGCCGGCgcggCGCc -3'
miRNA:   3'- caGC-GCCGG---UGGCU-CCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 19971 0.66 0.814603
Target:  5'- -cUGCGGCCGCCcuucGGGCUGuccguccugguggcGCUgCGCa -3'
miRNA:   3'- caGCGCCGGUGGc---UCCGGC--------------UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 184186 0.66 0.80879
Target:  5'- -cCGCGGCgccCGgCGAGGCCcGCUccCGCc -3'
miRNA:   3'- caGCGCCG---GUgGCUCCGGcUGAa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 192413 0.66 0.817072
Target:  5'- aGUCGaaacGCCGcgacggguCCGcGGCCGGCgcgUCGCg -3'
miRNA:   3'- -CAGCgc--CGGU--------GGCuCCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 23965 0.66 0.817072
Target:  5'- cUC-CGaGCCAgcggCGAGGCCGGCgccaccgUCGCu -3'
miRNA:   3'- cAGcGC-CGGUg---GCUCCGGCUGa------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 57415 0.66 0.817072
Target:  5'- -gCGUGGCCGgCGugcuGGUCGGCacggCGCc -3'
miRNA:   3'- caGCGCCGGUgGCu---CCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 63163 0.66 0.817072
Target:  5'- -cUGCuGCacgGCCGAGGCCGcgaaGCggUCGCg -3'
miRNA:   3'- caGCGcCGg--UGGCUCCGGC----UGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 68546 0.67 0.765356
Target:  5'- aUCGCGGCCGacaagcugCGGGugucGCCGACggCGUu -3'
miRNA:   3'- cAGCGCCGGUg-------GCUC----CGGCUGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.