Results 1 - 20 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10832 | 5' | -60.3 | NC_002794.1 | + | 59118 | 1.11 | 0.001157 |
Target: 5'- cGUCGCGGCCACCGAGGCCGACUUCGCg -3' miRNA: 3'- -CAGCGCCGGUGGCUCCGGCUGAAGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 194015 | 0.84 | 0.084374 |
Target: 5'- uUCGCGGCCGCCGccGCCGGCgccUCGCc -3' miRNA: 3'- cAGCGCCGGUGGCucCGGCUGa--AGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 41245 | 0.83 | 0.108453 |
Target: 5'- -cCGCGGCCGCCGAcGCCGGCggcccgucgUCGCg -3' miRNA: 3'- caGCGCCGGUGGCUcCGGCUGa--------AGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 120058 | 0.83 | 0.10317 |
Target: 5'- gGUgGCGGCCGCgGAGGCCGACgcgGCg -3' miRNA: 3'- -CAgCGCCGGUGgCUCCGGCUGaagCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 56316 | 0.81 | 0.135502 |
Target: 5'- gGUCGCuGGCgGCCGuGGCCGGCgaCGCg -3' miRNA: 3'- -CAGCG-CCGgUGGCuCCGGCUGaaGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 14768 | 0.8 | 0.153095 |
Target: 5'- cGUCGaGGCCGCUGAGGCCGGCgaggccggCGUg -3' miRNA: 3'- -CAGCgCCGGUGGCUCCGGCUGaa------GCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 102415 | 0.79 | 0.172734 |
Target: 5'- -aCGCGGCCgugGCCGAGGCCGcCacgCGCa -3' miRNA: 3'- caGCGCCGG---UGGCUCCGGCuGaa-GCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 61823 | 0.78 | 0.203991 |
Target: 5'- --gGCGGCCGCCGGcGGCCGGCgucacucCGCu -3' miRNA: 3'- cagCGCCGGUGGCU-CCGGCUGaa-----GCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 137563 | 0.78 | 0.208838 |
Target: 5'- cGUCGCGccgccgucGCCGCCGGGGCCGGag-UGCg -3' miRNA: 3'- -CAGCGC--------CGGUGGCUCCGGCUgaaGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 145471 | 0.77 | 0.257046 |
Target: 5'- --aGCGGUCGCCGaAGGCCGAggaUCGCg -3' miRNA: 3'- cagCGCCGGUGGC-UCCGGCUga-AGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 148137 | 0.76 | 0.281245 |
Target: 5'- -gCGgGGCCGCCGGGGCgagGGCggUCGCg -3' miRNA: 3'- caGCgCCGGUGGCUCCGg--CUGa-AGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 183859 | 0.76 | 0.294008 |
Target: 5'- cGUCGCGGCCGUCGGGGCCaccgccGACacCGCc -3' miRNA: 3'- -CAGCGCCGGUGGCUCCGG------CUGaaGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 186067 | 0.76 | 0.281245 |
Target: 5'- -cCGUGGCCACCGccGCCGccgcCUUCGCc -3' miRNA: 3'- caGCGCCGGUGGCucCGGCu---GAAGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 35768 | 0.76 | 0.262932 |
Target: 5'- cGUCGCGG-CACCGucGCCGGCgUCGUc -3' miRNA: 3'- -CAGCGCCgGUGGCucCGGCUGaAGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 128260 | 0.75 | 0.323662 |
Target: 5'- gGUCGCGGUCggggccgagcgcggaGCCGAcGGCCGuCUUCGa -3' miRNA: 3'- -CAGCGCCGG---------------UGGCU-CCGGCuGAAGCg -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 66947 | 0.75 | 0.307218 |
Target: 5'- -cCGaGGCCcUCGAGGCCGGCgagUCGCu -3' miRNA: 3'- caGCgCCGGuGGCUCCGGCUGa--AGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 185349 | 0.75 | 0.334985 |
Target: 5'- cUCGCGcGCCGCCGcgagcGGGCCGAacgcCGCg -3' miRNA: 3'- cAGCGC-CGGUGGC-----UCCGGCUgaa-GCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 11809 | 0.75 | 0.320876 |
Target: 5'- -cCGCcGCCGCCGucGCCGcCUUCGCu -3' miRNA: 3'- caGCGcCGGUGGCucCGGCuGAAGCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 57604 | 0.75 | 0.320876 |
Target: 5'- -gCGUGGCCACCGAgaaggcGGCCGACgaccUgGCc -3' miRNA: 3'- caGCGCCGGUGGCU------CCGGCUGa---AgCG- -5' |
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10832 | 5' | -60.3 | NC_002794.1 | + | 146001 | 0.75 | 0.327874 |
Target: 5'- ---aCGGCCGCCGGGGCCGGagaCGCc -3' miRNA: 3'- cagcGCCGGUGGCUCCGGCUgaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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