miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 59118 1.11 0.001157
Target:  5'- cGUCGCGGCCACCGAGGCCGACUUCGCg -3'
miRNA:   3'- -CAGCGCCGGUGGCUCCGGCUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 194015 0.84 0.084374
Target:  5'- uUCGCGGCCGCCGccGCCGGCgccUCGCc -3'
miRNA:   3'- cAGCGCCGGUGGCucCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 120058 0.83 0.10317
Target:  5'- gGUgGCGGCCGCgGAGGCCGACgcgGCg -3'
miRNA:   3'- -CAgCGCCGGUGgCUCCGGCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 41245 0.83 0.108453
Target:  5'- -cCGCGGCCGCCGAcGCCGGCggcccgucgUCGCg -3'
miRNA:   3'- caGCGCCGGUGGCUcCGGCUGa--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 56316 0.81 0.135502
Target:  5'- gGUCGCuGGCgGCCGuGGCCGGCgaCGCg -3'
miRNA:   3'- -CAGCG-CCGgUGGCuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 14768 0.8 0.153095
Target:  5'- cGUCGaGGCCGCUGAGGCCGGCgaggccggCGUg -3'
miRNA:   3'- -CAGCgCCGGUGGCUCCGGCUGaa------GCG- -5'
10832 5' -60.3 NC_002794.1 + 102415 0.79 0.172734
Target:  5'- -aCGCGGCCgugGCCGAGGCCGcCacgCGCa -3'
miRNA:   3'- caGCGCCGG---UGGCUCCGGCuGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 61823 0.78 0.203991
Target:  5'- --gGCGGCCGCCGGcGGCCGGCgucacucCGCu -3'
miRNA:   3'- cagCGCCGGUGGCU-CCGGCUGaa-----GCG- -5'
10832 5' -60.3 NC_002794.1 + 137563 0.78 0.208838
Target:  5'- cGUCGCGccgccgucGCCGCCGGGGCCGGag-UGCg -3'
miRNA:   3'- -CAGCGC--------CGGUGGCUCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 145471 0.77 0.257046
Target:  5'- --aGCGGUCGCCGaAGGCCGAggaUCGCg -3'
miRNA:   3'- cagCGCCGGUGGC-UCCGGCUga-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 35768 0.76 0.262932
Target:  5'- cGUCGCGG-CACCGucGCCGGCgUCGUc -3'
miRNA:   3'- -CAGCGCCgGUGGCucCGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 186067 0.76 0.281245
Target:  5'- -cCGUGGCCACCGccGCCGccgcCUUCGCc -3'
miRNA:   3'- caGCGCCGGUGGCucCGGCu---GAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 148137 0.76 0.281245
Target:  5'- -gCGgGGCCGCCGGGGCgagGGCggUCGCg -3'
miRNA:   3'- caGCgCCGGUGGCUCCGg--CUGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 183859 0.76 0.294008
Target:  5'- cGUCGCGGCCGUCGGGGCCaccgccGACacCGCc -3'
miRNA:   3'- -CAGCGCCGGUGGCUCCGG------CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 66947 0.75 0.307218
Target:  5'- -cCGaGGCCcUCGAGGCCGGCgagUCGCu -3'
miRNA:   3'- caGCgCCGGuGGCUCCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 11809 0.75 0.320876
Target:  5'- -cCGCcGCCGCCGucGCCGcCUUCGCu -3'
miRNA:   3'- caGCGcCGGUGGCucCGGCuGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 57604 0.75 0.320876
Target:  5'- -gCGUGGCCACCGAgaaggcGGCCGACgaccUgGCc -3'
miRNA:   3'- caGCGCCGGUGGCU------CCGGCUGa---AgCG- -5'
10832 5' -60.3 NC_002794.1 + 128260 0.75 0.323662
Target:  5'- gGUCGCGGUCggggccgagcgcggaGCCGAcGGCCGuCUUCGa -3'
miRNA:   3'- -CAGCGCCGG---------------UGGCU-CCGGCuGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 146001 0.75 0.327874
Target:  5'- ---aCGGCCGCCGGGGCCGGagaCGCc -3'
miRNA:   3'- cagcGCCGGUGGCUCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 185349 0.75 0.334985
Target:  5'- cUCGCGcGCCGCCGcgagcGGGCCGAacgcCGCg -3'
miRNA:   3'- cAGCGC-CGGUGGC-----UCCGGCUgaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.