miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 182966 0.74 0.340029
Target:  5'- --gGCGGCCggcuccucguucgaGCCGAcGGCCGgcGCUUCGCc -3'
miRNA:   3'- cagCGCCGG--------------UGGCU-CCGGC--UGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 34248 0.74 0.356987
Target:  5'- -gCGCGGCUGCCGccgcAGGCgGACcgCGCg -3'
miRNA:   3'- caGCGCCGGUGGC----UCCGgCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 52916 0.74 0.356987
Target:  5'- cGUCGCcGCCGCCGucgcucGGCCGGCa-CGCg -3'
miRNA:   3'- -CAGCGcCGGUGGCu-----CCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 110440 0.74 0.364543
Target:  5'- cGUCGuCGGUgGCgGAGGCCGGCga-GCc -3'
miRNA:   3'- -CAGC-GCCGgUGgCUCCGGCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 129156 0.74 0.379983
Target:  5'- uGUCGCGGCCcUCGcGGCCGAUggcCGUu -3'
miRNA:   3'- -CAGCGCCGGuGGCuCCGGCUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 141656 0.73 0.387866
Target:  5'- -cCGCGGCCGCCGgcGGGUCGAgCgaagacgggUCGCc -3'
miRNA:   3'- caGCGCCGGUGGC--UCCGGCU-Ga--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 119769 0.73 0.401511
Target:  5'- gGUCGCGGCCGgccuccaggcggcuCCGGuccGCCGACUugagcgUCGCg -3'
miRNA:   3'- -CAGCGCCGGU--------------GGCUc--CGGCUGA------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 181531 0.73 0.40395
Target:  5'- uUCGCccGCCGCCGgcGGGCCGGCgcucucggUCGCc -3'
miRNA:   3'- cAGCGc-CGGUGGC--UCCGGCUGa-------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 156411 0.73 0.407218
Target:  5'- -cCGCGGCCGCgGccacGGCCGGCgggugagagaccggUCGCg -3'
miRNA:   3'- caGCGCCGGUGgCu---CCGGCUGa-------------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 82545 0.73 0.426321
Target:  5'- cGUCaGCGGCCcucccgccggcccaGCCggcGAGGCCGACgcCGCc -3'
miRNA:   3'- -CAG-CGCCGG--------------UGG---CUCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 56908 0.73 0.428851
Target:  5'- -gCGUGGCCacgggcGCCGGGcuGCCGGCcUCGCa -3'
miRNA:   3'- caGCGCCGG------UGGCUC--CGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 61524 0.73 0.428851
Target:  5'- --gGCGGCCGCCGGcGGCCGc---CGCg -3'
miRNA:   3'- cagCGCCGGUGGCU-CCGGCugaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 112292 0.72 0.43735
Target:  5'- uGUCggGCGGCCcCCcGGGuCCGACUUCGg -3'
miRNA:   3'- -CAG--CGCCGGuGGcUCC-GGCUGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 90662 0.72 0.43735
Target:  5'- cUCGC-GCCGuuGGGGCCGGCcgCGUg -3'
miRNA:   3'- cAGCGcCGGUggCUCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 76523 0.72 0.445946
Target:  5'- cGUCccaGGCCACCGgccgcGGcGCCGACgcggUCGCg -3'
miRNA:   3'- -CAGcg-CCGGUGGC-----UC-CGGCUGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 193983 0.72 0.454635
Target:  5'- -cCGCGGCCgcuACCGccGCCcccGGCUUCGCc -3'
miRNA:   3'- caGCGCCGG---UGGCucCGG---CUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 68763 0.72 0.454635
Target:  5'- -cCG-GGCCGCCGGGGCgccggacgccCGGCUcUCGCg -3'
miRNA:   3'- caGCgCCGGUGGCUCCG----------GCUGA-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 194055 0.72 0.454635
Target:  5'- -cCGCcGCCGCCGAGagcGCCGcCUUCGUc -3'
miRNA:   3'- caGCGcCGGUGGCUC---CGGCuGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 111630 0.72 0.454635
Target:  5'- -cCGCGGCCGCCGccGGUCgGGCgcCGCg -3'
miRNA:   3'- caGCGCCGGUGGCu-CCGG-CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 147322 0.72 0.454635
Target:  5'- -gUGCGGCUcuUCGGGGCCGAUcUCGUg -3'
miRNA:   3'- caGCGCCGGu-GGCUCCGGCUGaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.