miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 112820 0.72 0.463414
Target:  5'- cGUCugcuCGGCCGCCGAGuaCGGCUgcUCGUc -3'
miRNA:   3'- -CAGc---GCCGGUGGCUCcgGCUGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 100325 0.72 0.463414
Target:  5'- -gCGCGGCCGgCGcacGGCCGGCUcUCGa -3'
miRNA:   3'- caGCGCCGGUgGCu--CCGGCUGA-AGCg -5'
10832 5' -60.3 NC_002794.1 + 40479 0.72 0.463414
Target:  5'- --gGCGGCuCAUCGAacGGCCGGCgcUCGCc -3'
miRNA:   3'- cagCGCCG-GUGGCU--CCGGCUGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 57558 0.72 0.472281
Target:  5'- aUCGCGcaccacGCCAUCcuGGCCGACUUCGa -3'
miRNA:   3'- cAGCGC------CGGUGGcuCCGGCUGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 118679 0.72 0.472281
Target:  5'- -cCGCGGCCGCCGccGgCGGCagCGCc -3'
miRNA:   3'- caGCGCCGGUGGCucCgGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 119552 0.72 0.472281
Target:  5'- cGUCGcCGGCCACgugucccgGAGcGCCuuGACUUCGCc -3'
miRNA:   3'- -CAGC-GCCGGUGg-------CUC-CGG--CUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 17449 0.72 0.481234
Target:  5'- cUCG-GGCCcgcgACCGAGGUCGAaggUUCGCu -3'
miRNA:   3'- cAGCgCCGG----UGGCUCCGGCUg--AAGCG- -5'
10832 5' -60.3 NC_002794.1 + 22716 0.72 0.481234
Target:  5'- -aCGCGG-CGCCGAGaGCCGGCgaacggUCGg -3'
miRNA:   3'- caGCGCCgGUGGCUC-CGGCUGa-----AGCg -5'
10832 5' -60.3 NC_002794.1 + 149233 0.72 0.481234
Target:  5'- -gCGCcGCCGCCGucGCCGGggUCGCg -3'
miRNA:   3'- caGCGcCGGUGGCucCGGCUgaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 72911 0.72 0.481234
Target:  5'- cGUCGCGcucGCCGCCGccgucGGaGCCGGCguccgCGCg -3'
miRNA:   3'- -CAGCGC---CGGUGGC-----UC-CGGCUGaa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 187588 0.71 0.490268
Target:  5'- -gCGCGGCCGCCGucGCgacgccCGGCgUCGCc -3'
miRNA:   3'- caGCGCCGGUGGCucCG------GCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 70671 0.71 0.490268
Target:  5'- --gGCGGCCGCCGcGGCggUGACguccugUCGCc -3'
miRNA:   3'- cagCGCCGGUGGCuCCG--GCUGa-----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 91235 0.71 0.49938
Target:  5'- -gCGCGGCgGCCGucGGGCUGcGCU-CGCg -3'
miRNA:   3'- caGCGCCGgUGGC--UCCGGC-UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 145568 0.71 0.508567
Target:  5'- uUCGCGGacgagCGCCGAcggagcggcGGCCGGCUccCGCg -3'
miRNA:   3'- cAGCGCCg----GUGGCU---------CCGGCUGAa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 149681 0.71 0.508567
Target:  5'- cGUCGCgcucgacuGGCCGCgGGGGCCGcCUg-GCg -3'
miRNA:   3'- -CAGCG--------CCGGUGgCUCCGGCuGAagCG- -5'
10832 5' -60.3 NC_002794.1 + 113925 0.71 0.508567
Target:  5'- --gGuCGGCCGCCGAGG-CGACgggcCGCu -3'
miRNA:   3'- cagC-GCCGGUGGCUCCgGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 145420 0.71 0.516895
Target:  5'- -gCGCGGCgCGCCGccGUCGGCUcacgagcUCGCg -3'
miRNA:   3'- caGCGCCG-GUGGCucCGGCUGA-------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 36359 0.71 0.516895
Target:  5'- -gCGCGGCCACCGGGuGCgcgcccgCGGCgaaGCg -3'
miRNA:   3'- caGCGCCGGUGGCUC-CG-------GCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 58421 0.71 0.517824
Target:  5'- -gUGCGGCCgccgccagacGCCGAGGCCacGCUgCGCc -3'
miRNA:   3'- caGCGCCGG----------UGGCUCCGGc-UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 34736 0.71 0.517824
Target:  5'- --gGCGGCCGCaGAGcGCgCGACggCGCg -3'
miRNA:   3'- cagCGCCGGUGgCUC-CG-GCUGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.