miRNA display CGI


Results 61 - 80 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 34736 0.71 0.517824
Target:  5'- --gGCGGCCGCaGAGcGCgCGACggCGCg -3'
miRNA:   3'- cagCGCCGGUGgCUC-CG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 58007 0.71 0.517824
Target:  5'- uUCGUcGCCGCCGGGGCCGc---CGCc -3'
miRNA:   3'- cAGCGcCGGUGGCUCCGGCugaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 19512 0.71 0.517824
Target:  5'- gGUCGC-GCCGCUcgGAGcGCCGGCgcggCGCg -3'
miRNA:   3'- -CAGCGcCGGUGG--CUC-CGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 153664 0.71 0.517824
Target:  5'- cGUC-CGGCCGCCgguuguGAGGCuCGACg-CGCg -3'
miRNA:   3'- -CAGcGCCGGUGG------CUCCG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 105429 0.71 0.527148
Target:  5'- --gGUGGCCGCCGccgcGCCGGCggCGCc -3'
miRNA:   3'- cagCGCCGGUGGCuc--CGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 121496 0.71 0.527148
Target:  5'- -aCGCGGCCuccGCCGGGG-CGACgaCGUc -3'
miRNA:   3'- caGCGCCGG---UGGCUCCgGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 147584 0.71 0.527148
Target:  5'- --aGCGGCaCACCGAGGC--GCU-CGCg -3'
miRNA:   3'- cagCGCCG-GUGGCUCCGgcUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 71794 0.71 0.536533
Target:  5'- aGUCGCcccccggcgGGCgCGgCGAGGCCGcCUcgUCGCg -3'
miRNA:   3'- -CAGCG---------CCG-GUgGCUCCGGCuGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 51368 0.71 0.536533
Target:  5'- --gGCGGCCGCCccguccGGCCGGCgacaggCGCc -3'
miRNA:   3'- cagCGCCGGUGGcu----CCGGCUGaa----GCG- -5'
10832 5' -60.3 NC_002794.1 + 146163 0.7 0.542192
Target:  5'- uGUCGcCGGCCuaucaggagcgcuUCGAGGCCGAgg-CGCg -3'
miRNA:   3'- -CAGC-GCCGGu------------GGCUCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 138413 0.7 0.545029
Target:  5'- cGUCGcCGGCCGCCGAcucgucgagccgcGGUggCGGCggCGCc -3'
miRNA:   3'- -CAGC-GCCGGUGGCU-------------CCG--GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 94283 0.7 0.545976
Target:  5'- -gCGCGGCCcgaGCgGGGGgCGGCUcgggCGCg -3'
miRNA:   3'- caGCGCCGG---UGgCUCCgGCUGAa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 12 0.7 0.545976
Target:  5'- -aCGCGGCCGCgaacacgaaaaCGAGGCCGc---CGCg -3'
miRNA:   3'- caGCGCCGGUG-----------GCUCCGGCugaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 41352 0.7 0.555472
Target:  5'- -cCGgGGUCACCGccGUCGGcCUUCGCg -3'
miRNA:   3'- caGCgCCGGUGGCucCGGCU-GAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 88745 0.7 0.555472
Target:  5'- cUCGgGGUCGCCGAGGaauguggugcCUGGCgUCGCc -3'
miRNA:   3'- cAGCgCCGGUGGCUCC----------GGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 42648 0.7 0.555472
Target:  5'- aGUCGCGGCCGaa---GCCGACggCGCc -3'
miRNA:   3'- -CAGCGCCGGUggcucCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 126378 0.7 0.555472
Target:  5'- -gCGUGGgCGCCGGGGCCugcgcggcGGCgugCGCg -3'
miRNA:   3'- caGCGCCgGUGGCUCCGG--------CUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 121918 0.7 0.565015
Target:  5'- cGUCGCccGCCGCgggggaaGAGGCCGACg-CGCu -3'
miRNA:   3'- -CAGCGc-CGGUGg------CUCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 42599 0.7 0.565015
Target:  5'- -gCGCGGCgGCCGGGaGCgGGCUcucUCGa -3'
miRNA:   3'- caGCGCCGgUGGCUC-CGgCUGA---AGCg -5'
10832 5' -60.3 NC_002794.1 + 55310 0.7 0.57364
Target:  5'- cGUCGCGGCgGgcgcgggcggcuuCCGAGGacCCGGggUCGCg -3'
miRNA:   3'- -CAGCGCCGgU-------------GGCUCC--GGCUgaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.