miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 184186 0.66 0.80879
Target:  5'- -cCGCGGCgccCGgCGAGGCCcGCUccCGCc -3'
miRNA:   3'- caGCGCCG---GUgGCUCCGGcUGAa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 107514 0.66 0.80879
Target:  5'- -gUGcCGGUCgacGCCGAcGGCCGGCgcggCGCc -3'
miRNA:   3'- caGC-GCCGG---UGGCU-CCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 77961 0.66 0.80879
Target:  5'- -cCGCcGUCGCCGA-GCCGACUccucCGCc -3'
miRNA:   3'- caGCGcCGGUGGCUcCGGCUGAa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 49018 0.66 0.80879
Target:  5'- -cCGCGGCgGCCGcGGCgucgucCGGCgcggUCGUc -3'
miRNA:   3'- caGCGCCGgUGGCuCCG------GCUGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 112692 0.66 0.80879
Target:  5'- -cCGC-GUCACCGcGGCCaGCUucUCGCg -3'
miRNA:   3'- caGCGcCGGUGGCuCCGGcUGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 143491 0.66 0.800362
Target:  5'- uGUCGCuGGCCG-CGGGGCUGcagaugaggaaGCgcacgUCGCc -3'
miRNA:   3'- -CAGCG-CCGGUgGCUCCGGC-----------UGa----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 105924 0.66 0.800362
Target:  5'- -cCGCcGCCGCCGgacGGGCUGGacgCGCu -3'
miRNA:   3'- caGCGcCGGUGGC---UCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 143699 0.66 0.800362
Target:  5'- gGUCGCGuugcCCACCGcGGGCCccGGCgggcgUCGUc -3'
miRNA:   3'- -CAGCGCc---GGUGGC-UCCGG--CUGa----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 112247 0.66 0.800362
Target:  5'- -cCGCGaacGCCGCCGgcGGGaCCGGCgucUCGUc -3'
miRNA:   3'- caGCGC---CGGUGGC--UCC-GGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 180894 0.66 0.800362
Target:  5'- gGUCuCGGCCGCgGAcucGGCCG-CggucUCGCc -3'
miRNA:   3'- -CAGcGCCGGUGgCU---CCGGCuGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 126248 0.66 0.800362
Target:  5'- aUCGUGG-CGCgCGAGGUCGGCggcUgGCu -3'
miRNA:   3'- cAGCGCCgGUG-GCUCCGGCUGa--AgCG- -5'
10832 5' -60.3 NC_002794.1 + 48887 0.66 0.799512
Target:  5'- gGUgGCaGGCCAgcguugccgcagcUCGGGGCCG-CUcCGCa -3'
miRNA:   3'- -CAgCG-CCGGU-------------GGCUCCGGCuGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 30071 0.66 0.791798
Target:  5'- gGUC-CGGUCGCCc-GGUCGACgaggCGCg -3'
miRNA:   3'- -CAGcGCCGGUGGcuCCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 37936 0.66 0.791798
Target:  5'- -cCGCGGCCGCCcguGCCucGGCgacUCGCu -3'
miRNA:   3'- caGCGCCGGUGGcucCGG--CUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 81332 0.66 0.791798
Target:  5'- -cCGCGGuacgcuCCGCCGucGCCGACgg-GCa -3'
miRNA:   3'- caGCGCC------GGUGGCucCGGCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 67740 0.66 0.791798
Target:  5'- --gGCGGCCAcCCGAGcCCGGaucacggcUCGCg -3'
miRNA:   3'- cagCGCCGGU-GGCUCcGGCUga------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 150405 0.66 0.791798
Target:  5'- gGUUGCGGCagaaGCCGuGGCCcGCgagGCu -3'
miRNA:   3'- -CAGCGCCGg---UGGCuCCGGcUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 127368 0.66 0.791798
Target:  5'- -gCGCGGCCGCuCGugucGGCgGACg--GCa -3'
miRNA:   3'- caGCGCCGGUG-GCu---CCGgCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 84762 0.66 0.791798
Target:  5'- -cCGCgagagGGCCGuCCGAGGCCcggcccGGCUcucucUCGCc -3'
miRNA:   3'- caGCG-----CCGGU-GGCUCCGG------CUGA-----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 145856 0.66 0.791798
Target:  5'- cUCGaCGaGCCGCCGAGGgCCG-CgaccggacCGCg -3'
miRNA:   3'- cAGC-GC-CGGUGGCUCC-GGCuGaa------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.