miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 84762 0.66 0.791798
Target:  5'- -cCGCgagagGGCCGuCCGAGGCCcggcccGGCUcucucUCGCc -3'
miRNA:   3'- caGCG-----CCGGU-GGCUCCGG------CUGA-----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 152202 0.66 0.791798
Target:  5'- gGUCGCGuuCCGCCcgGAGGCgucgGACgUCGCg -3'
miRNA:   3'- -CAGCGCc-GGUGG--CUCCGg---CUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 98936 0.66 0.783103
Target:  5'- -gCGCGGCCgggaagggGCUGGGGCuCGuGCUgggCGCn -3'
miRNA:   3'- caGCGCCGG--------UGGCUCCG-GC-UGAa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 115929 0.66 0.783103
Target:  5'- -gCGCGGCgGC--GGGCCGGCccgcCGCg -3'
miRNA:   3'- caGCGCCGgUGgcUCCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 111121 0.66 0.783103
Target:  5'- cGUCGaCGG-CGCCGGcGGCCGguGCUccaCGCg -3'
miRNA:   3'- -CAGC-GCCgGUGGCU-CCGGC--UGAa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 53239 0.66 0.783103
Target:  5'- cGUCcuCGGcCCGCCGc-GCCGGCgUCGCc -3'
miRNA:   3'- -CAGc-GCC-GGUGGCucCGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 150589 0.66 0.783103
Target:  5'- cUCGgGcGCCcgaggacgGCCGGGcGCCGGCUcUGCg -3'
miRNA:   3'- cAGCgC-CGG--------UGGCUC-CGGCUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 125744 0.66 0.783103
Target:  5'- --gGCgGGCCGCgGGacggcGGCCGGCggcUCGCc -3'
miRNA:   3'- cagCG-CCGGUGgCU-----CCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 149964 0.66 0.783103
Target:  5'- -aCGUGGCCgaccuGCCGcGGaCCGGCggcCGCu -3'
miRNA:   3'- caGCGCCGG-----UGGCuCC-GGCUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 191809 0.66 0.783103
Target:  5'- -cCGCucGGCCGCuCGAGGaCCGcgaGCU-CGCu -3'
miRNA:   3'- caGCG--CCGGUG-GCUCC-GGC---UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 42054 0.66 0.774287
Target:  5'- -gCGCGuGCCAgaUGAuguuGGCCGACUggcCGCg -3'
miRNA:   3'- caGCGC-CGGUg-GCU----CCGGCUGAa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 72168 0.66 0.774287
Target:  5'- -aCGC-GCUGCCGguAGGCCGcgaacGCUUUGCa -3'
miRNA:   3'- caGCGcCGGUGGC--UCCGGC-----UGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 140010 0.66 0.774287
Target:  5'- gGUgGaGGCCGCgGAGGCCGcgGCcccCGCg -3'
miRNA:   3'- -CAgCgCCGGUGgCUCCGGC--UGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 12922 0.66 0.774287
Target:  5'- -cCGCcuGGCCGUCGAcgaccuGGCgGACUUCGUg -3'
miRNA:   3'- caGCG--CCGGUGGCU------CCGgCUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 43721 0.66 0.774287
Target:  5'- cGUCuCGGCCAcCCGAucGGCCuuCUUgGCc -3'
miRNA:   3'- -CAGcGCCGGU-GGCU--CCGGcuGAAgCG- -5'
10832 5' -60.3 NC_002794.1 + 24189 0.66 0.774287
Target:  5'- -cCGCGG-CACCGAGaCCGAg--CGCg -3'
miRNA:   3'- caGCGCCgGUGGCUCcGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 65238 0.66 0.773399
Target:  5'- --gGCGGUCGCCGcGGCggcgaucCGGCcUCGCc -3'
miRNA:   3'- cagCGCCGGUGGCuCCG-------GCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 43588 0.66 0.771619
Target:  5'- -aCGCGGCCACCGucagguugugcaccAGGCagcagGACguggcCGCc -3'
miRNA:   3'- caGCGCCGGUGGC--------------UCCGg----CUGaa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 41845 0.66 0.770728
Target:  5'- gGUCGaucagcagccccaGGCCGCCGggcaGGGCCGGg--CGCu -3'
miRNA:   3'- -CAGCg------------CCGGUGGC----UCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 68546 0.67 0.765356
Target:  5'- aUCGCGGCCGacaagcugCGGGugucGCCGACggCGUu -3'
miRNA:   3'- cAGCGCCGGUg-------GCUC----CGGCUGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.