miRNA display CGI


Results 61 - 80 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 71101 0.67 0.765356
Target:  5'- gGUCGcCGGCgGCCu-GGCCGGagaggCGCu -3'
miRNA:   3'- -CAGC-GCCGgUGGcuCCGGCUgaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 79003 0.67 0.765356
Target:  5'- aGUCGCGGCgacuccauccCGCCcucGGCCGcCUUCuGCc -3'
miRNA:   3'- -CAGCGCCG----------GUGGcu-CCGGCuGAAG-CG- -5'
10832 5' -60.3 NC_002794.1 + 89694 0.67 0.765356
Target:  5'- uUCGCGGCgaauauaaacggCGCCGcGGuGCCGAUccgCGCg -3'
miRNA:   3'- cAGCGCCG------------GUGGC-UC-CGGCUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 182538 0.67 0.765356
Target:  5'- -gCGCGGCagcgacugCGCCGcGGCCGGCacCGUc -3'
miRNA:   3'- caGCGCCG--------GUGGCuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 118200 0.67 0.765356
Target:  5'- cGUCGCcGCCGCCGucGCC----UCGCg -3'
miRNA:   3'- -CAGCGcCGGUGGCucCGGcugaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 47765 0.67 0.765356
Target:  5'- gGUCGCGGCacaACgCGcAGGUCGAgCggcCGCa -3'
miRNA:   3'- -CAGCGCCGg--UG-GC-UCCGGCU-Gaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 1215 0.67 0.765356
Target:  5'- aUCGgGGCC-CCGGGG-CGugUUCu- -3'
miRNA:   3'- cAGCgCCGGuGGCUCCgGCugAAGcg -5'
10832 5' -60.3 NC_002794.1 + 68546 0.67 0.765356
Target:  5'- aUCGCGGCCGacaagcugCGGGugucGCCGACggCGUu -3'
miRNA:   3'- cAGCGCCGGUg-------GCUC----CGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 65123 0.67 0.765356
Target:  5'- gGUCGCGcGCCuguCCGAGcuccucGgCGACUgggUCGCc -3'
miRNA:   3'- -CAGCGC-CGGu--GGCUC------CgGCUGA---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 28719 0.67 0.764457
Target:  5'- cGUCGCcGCCGuccgaccguguccCCGAGGCCcg--UCGCu -3'
miRNA:   3'- -CAGCGcCGGU-------------GGCUCCGGcugaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 93995 0.67 0.756318
Target:  5'- -gCGCGGaCGCCGGcGCCGGCggCGg -3'
miRNA:   3'- caGCGCCgGUGGCUcCGGCUGaaGCg -5'
10832 5' -60.3 NC_002794.1 + 121397 0.67 0.756318
Target:  5'- -cCGCGGCCggcGCCGGGaCCgcGACcgUCGCc -3'
miRNA:   3'- caGCGCCGG---UGGCUCcGG--CUGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 182192 0.67 0.756318
Target:  5'- -aCGgGGCC-UCGGcGCCGGCgUCGCg -3'
miRNA:   3'- caGCgCCGGuGGCUcCGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 76833 0.67 0.756318
Target:  5'- --aGCGGCCGgCGAugcGcGCCGGCcUCGUc -3'
miRNA:   3'- cagCGCCGGUgGCU---C-CGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 181831 0.67 0.756318
Target:  5'- uUCGCGGCCAggucCCG-GGC-GAgcUCGCa -3'
miRNA:   3'- cAGCGCCGGU----GGCuCCGgCUgaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 82009 0.67 0.747181
Target:  5'- -aCGcCGGCCGCUGAcGCCGAaacccgacgaUCGCg -3'
miRNA:   3'- caGC-GCCGGUGGCUcCGGCUga--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 150254 0.67 0.747181
Target:  5'- -cUGCGGCUcguGCCGcucGGUCGACUgacgcCGCa -3'
miRNA:   3'- caGCGCCGG---UGGCu--CCGGCUGAa----GCG- -5'
10832 5' -60.3 NC_002794.1 + 138744 0.67 0.747181
Target:  5'- gGUCccCGGCCcuCCgGGGGCCGAg-UCGCg -3'
miRNA:   3'- -CAGc-GCCGGu-GG-CUCCGGCUgaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 37988 0.67 0.747181
Target:  5'- aUCGCGGUCAgCCGGGccacGCCGuaggccugcagcGCUUCGg -3'
miRNA:   3'- cAGCGCCGGU-GGCUC----CGGC------------UGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 106977 0.67 0.747181
Target:  5'- -gCGCGGCgGCCGGcacGGCggUGGCggCGCu -3'
miRNA:   3'- caGCGCCGgUGGCU---CCG--GCUGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.