miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 12 0.7 0.545976
Target:  5'- -aCGCGGCCGCgaacacgaaaaCGAGGCCGc---CGCg -3'
miRNA:   3'- caGCGCCGGUG-----------GCUCCGGCugaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 1215 0.67 0.765356
Target:  5'- aUCGgGGCC-CCGGGG-CGugUUCu- -3'
miRNA:   3'- cAGCgCCGGuGGCUCCgGCugAAGcg -5'
10832 5' -60.3 NC_002794.1 + 11533 0.68 0.681119
Target:  5'- -cUGCgGGCgACCGAGGaCCGcgGCUggUCGCu -3'
miRNA:   3'- caGCG-CCGgUGGCUCC-GGC--UGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 11809 0.75 0.320876
Target:  5'- -cCGCcGCCGCCGucGCCGcCUUCGCu -3'
miRNA:   3'- caGCGcCGGUGGCucCGGCuGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 12175 0.68 0.671475
Target:  5'- cGUCGCcgccgacGCCGCCGcGGCCgGGCgcCGCu -3'
miRNA:   3'- -CAGCGc------CGGUGGCuCCGG-CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 12922 0.66 0.774287
Target:  5'- -cCGCcuGGCCGUCGAcgaccuGGCgGACUUCGUg -3'
miRNA:   3'- caGCG--CCGGUGGCU------CCGgCUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 14722 0.67 0.719257
Target:  5'- cUCGCGGCUucgGCuCGGGGuCCGGCgcgUCa- -3'
miRNA:   3'- cAGCGCCGG---UG-GCUCC-GGCUGa--AGcg -5'
10832 5' -60.3 NC_002794.1 + 14768 0.8 0.153095
Target:  5'- cGUCGaGGCCGCUGAGGCCGGCgaggccggCGUg -3'
miRNA:   3'- -CAGCgCCGGUGGCUCCGGCUGaa------GCG- -5'
10832 5' -60.3 NC_002794.1 + 14882 0.69 0.622964
Target:  5'- uUCGCcGCgaGCCGAGaCCGAcCUUCGCg -3'
miRNA:   3'- cAGCGcCGg-UGGCUCcGGCU-GAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 16708 0.66 0.825204
Target:  5'- aGUCGCucGCCGuCCGAGgagucugcGCCGGCUcCGUc -3'
miRNA:   3'- -CAGCGc-CGGU-GGCUC--------CGGCUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 17449 0.72 0.481234
Target:  5'- cUCG-GGCCcgcgACCGAGGUCGAaggUUCGCu -3'
miRNA:   3'- cAGCgCCGG----UGGCUCCGGCUg--AAGCG- -5'
10832 5' -60.3 NC_002794.1 + 17650 0.66 0.791798
Target:  5'- -cCGCGGCCGCCGccaccGCCGcCacCGCc -3'
miRNA:   3'- caGCGCCGGUGGCuc---CGGCuGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 18868 0.69 0.642397
Target:  5'- aUCGCcaacGCCACCGAcGCCGGCgcggaGCg -3'
miRNA:   3'- cAGCGc---CGGUGGCUcCGGCUGaag--CG- -5'
10832 5' -60.3 NC_002794.1 + 19512 0.71 0.517824
Target:  5'- gGUCGC-GCCGCUcgGAGcGCCGGCgcggCGCg -3'
miRNA:   3'- -CAGCGcCGGUGG--CUC-CGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 19971 0.66 0.814603
Target:  5'- -cUGCGGCCGCCcuucGGGCUGuccguccugguggcGCUgCGCa -3'
miRNA:   3'- caGCGCCGGUGGc---UCCGGC--------------UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 21579 0.68 0.690728
Target:  5'- cGUCGUGcGCgACCGGGGCgGuCUgUGCc -3'
miRNA:   3'- -CAGCGC-CGgUGGCUCCGgCuGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 22716 0.72 0.481234
Target:  5'- -aCGCGG-CGCCGAGaGCCGGCgaacggUCGg -3'
miRNA:   3'- caGCGCCgGUGGCUC-CGGCUGa-----AGCg -5'
10832 5' -60.3 NC_002794.1 + 22920 0.69 0.617136
Target:  5'- -cCGCGGCCGCCaaaccggcacccaucGGcuGGCCGACgggccggCGCc -3'
miRNA:   3'- caGCGCCGGUGG---------------CU--CCGGCUGaa-----GCG- -5'
10832 5' -60.3 NC_002794.1 + 23691 0.67 0.737954
Target:  5'- -aCGC-GCCGCCGAGGCCccGAag-CGUc -3'
miRNA:   3'- caGCGcCGGUGGCUCCGG--CUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 23965 0.66 0.817072
Target:  5'- cUC-CGaGCCAgcggCGAGGCCGGCgccaccgUCGCu -3'
miRNA:   3'- cAGcGC-CGGUg---GCUCCGGCUGa------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.