miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 24189 0.66 0.774287
Target:  5'- -cCGCGG-CACCGAGaCCGAg--CGCg -3'
miRNA:   3'- caGCGCCgGUGGCUCcGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 28719 0.67 0.764457
Target:  5'- cGUCGCcGCCGuccgaccguguccCCGAGGCCcg--UCGCu -3'
miRNA:   3'- -CAGCGcCGGU-------------GGCUCCGGcugaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 30071 0.66 0.791798
Target:  5'- gGUC-CGGUCGCCc-GGUCGACgaggCGCg -3'
miRNA:   3'- -CAGcGCCGGUGGcuCCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 32304 0.68 0.681119
Target:  5'- -cCGCGGCgGCCGc-GCCGGC--CGCg -3'
miRNA:   3'- caGCGCCGgUGGCucCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 32597 0.68 0.700292
Target:  5'- -cCGgGGCCgggGCCGGGGCCGGggaUCGg -3'
miRNA:   3'- caGCgCCGG---UGGCUCCGGCUga-AGCg -5'
10832 5' -60.3 NC_002794.1 + 32825 0.68 0.690728
Target:  5'- uUCGuCGGCC-UCGcGGCCGGCUcaUCGg -3'
miRNA:   3'- cAGC-GCCGGuGGCuCCGGCUGA--AGCg -5'
10832 5' -60.3 NC_002794.1 + 34040 0.68 0.709804
Target:  5'- -cCGCcuGCUGCCG-GGCCGGCccgCGCa -3'
miRNA:   3'- caGCGc-CGGUGGCuCCGGCUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 34248 0.74 0.356987
Target:  5'- -gCGCGGCUGCCGccgcAGGCgGACcgCGCg -3'
miRNA:   3'- caGCGCCGGUGGC----UCCGgCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 34736 0.71 0.517824
Target:  5'- --gGCGGCCGCaGAGcGCgCGACggCGCg -3'
miRNA:   3'- cagCGCCGGUGgCUC-CG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 35768 0.76 0.262932
Target:  5'- cGUCGCGG-CACCGucGCCGGCgUCGUc -3'
miRNA:   3'- -CAGCGCCgGUGGCucCGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 36359 0.71 0.516895
Target:  5'- -gCGCGGCCACCGGGuGCgcgcccgCGGCgaaGCg -3'
miRNA:   3'- caGCGCCGGUGGCUC-CG-------GCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 37936 0.66 0.791798
Target:  5'- -cCGCGGCCGCCcguGCCucGGCgacUCGCu -3'
miRNA:   3'- caGCGCCGGUGGcucCGG--CUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 37988 0.67 0.747181
Target:  5'- aUCGCGGUCAgCCGGGccacGCCGuaggccugcagcGCUUCGg -3'
miRNA:   3'- cAGCGCCGGU-GGCUC----CGGC------------UGAAGCg -5'
10832 5' -60.3 NC_002794.1 + 38586 0.68 0.699338
Target:  5'- --aGuCGGCCGCCuccucccggacgaGAGGCCGgACgggCGCg -3'
miRNA:   3'- cagC-GCCGGUGG-------------CUCCGGC-UGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 40479 0.72 0.463414
Target:  5'- --gGCGGCuCAUCGAacGGCCGGCgcUCGCc -3'
miRNA:   3'- cagCGCCG-GUGGCU--CCGGCUGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 40513 0.69 0.603555
Target:  5'- aGUCaCGGCCGCCGAcGcGCCGACg---- -3'
miRNA:   3'- -CAGcGCCGGUGGCU-C-CGGCUGaagcg -5'
10832 5' -60.3 NC_002794.1 + 41245 0.83 0.108453
Target:  5'- -cCGCGGCCGCCGAcGCCGGCggcccgucgUCGCg -3'
miRNA:   3'- caGCGCCGGUGGCUcCGGCUGa--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 41352 0.7 0.555472
Target:  5'- -cCGgGGUCACCGccGUCGGcCUUCGCg -3'
miRNA:   3'- caGCgCCGGUGGCucCGGCU-GAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 41845 0.66 0.770728
Target:  5'- gGUCGaucagcagccccaGGCCGCCGggcaGGGCCGGg--CGCu -3'
miRNA:   3'- -CAGCg------------CCGGUGGC----UCCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 42054 0.66 0.774287
Target:  5'- -gCGCGuGCCAgaUGAuguuGGCCGACUggcCGCg -3'
miRNA:   3'- caGCGC-CGGUg-GCU----CCGGCUGAa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.