miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 42477 0.69 0.63268
Target:  5'- uGUCGC-GCgCGCCGGGGCCGAg--CGg -3'
miRNA:   3'- -CAGCGcCG-GUGGCUCCGGCUgaaGCg -5'
10832 5' -60.3 NC_002794.1 + 42599 0.7 0.565015
Target:  5'- -gCGCGGCgGCCGGGaGCgGGCUcucUCGa -3'
miRNA:   3'- caGCGCCGgUGGCUC-CGgCUGA---AGCg -5'
10832 5' -60.3 NC_002794.1 + 42648 0.7 0.555472
Target:  5'- aGUCGCGGCCGaa---GCCGACggCGCc -3'
miRNA:   3'- -CAGCGCCGGUggcucCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 43588 0.66 0.771619
Target:  5'- -aCGCGGCCACCGucagguugugcaccAGGCagcagGACguggcCGCc -3'
miRNA:   3'- caGCGCCGGUGGC--------------UCCGg----CUGaa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 43721 0.66 0.774287
Target:  5'- cGUCuCGGCCAcCCGAucGGCCuuCUUgGCc -3'
miRNA:   3'- -CAGcGCCGGU-GGCU--CCGGcuGAAgCG- -5'
10832 5' -60.3 NC_002794.1 + 44290 0.69 0.613253
Target:  5'- -cCGCGcCCGCCG-GGCCGGCgagGCg -3'
miRNA:   3'- caGCGCcGGUGGCuCCGGCUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 44509 0.68 0.690728
Target:  5'- --gGCGGCCcagACCGGGcCCGugUcCGCg -3'
miRNA:   3'- cagCGCCGG---UGGCUCcGGCugAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 44718 0.66 0.817072
Target:  5'- -cCGCGGCgACgucGGCCGGCgcCGCc -3'
miRNA:   3'- caGCGCCGgUGgcuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 46169 0.68 0.709804
Target:  5'- aUCGCGcacagcGCCGCCGAGaccCCGGCacCGCg -3'
miRNA:   3'- cAGCGC------CGGUGGCUCc--GGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 47127 0.67 0.719257
Target:  5'- -cCGCuGCCGCCGAcucuucGGCCGGa--CGCa -3'
miRNA:   3'- caGCGcCGGUGGCU------CCGGCUgaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 47765 0.67 0.765356
Target:  5'- gGUCGCGGCacaACgCGcAGGUCGAgCggcCGCa -3'
miRNA:   3'- -CAGCGCCGg--UG-GC-UCCGGCU-Gaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 48632 0.69 0.642397
Target:  5'- --aGCGGCCGUCGGGGCCcGCgagcCGCc -3'
miRNA:   3'- cagCGCCGGUGGCUCCGGcUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 48887 0.66 0.799512
Target:  5'- gGUgGCaGGCCAgcguugccgcagcUCGGGGCCG-CUcCGCa -3'
miRNA:   3'- -CAgCG-CCGGU-------------GGCUCCGGCuGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 49018 0.66 0.80879
Target:  5'- -cCGCGGCgGCCGcGGCgucgucCGGCgcggUCGUc -3'
miRNA:   3'- caGCGCCGgUGGCuCCG------GCUGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 49820 0.67 0.72302
Target:  5'- -cCGCGGCCACgucugauaggCGAGGCgccgccauuccgcguCGGCggCGCc -3'
miRNA:   3'- caGCGCCGGUG----------GCUCCG---------------GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 50585 0.68 0.661801
Target:  5'- -gCGCGGCgGCUGGguGGCCGGCgcCGg -3'
miRNA:   3'- caGCGCCGgUGGCU--CCGGCUGaaGCg -5'
10832 5' -60.3 NC_002794.1 + 50720 0.67 0.737954
Target:  5'- cUCGCGuucGCCGcCCGGGGCggccgccuCGACU-CGCu -3'
miRNA:   3'- cAGCGC---CGGU-GGCUCCG--------GCUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 51219 0.66 0.825204
Target:  5'- --aGCGGCCgGCC--GGCCGAUgggaaacggUCGCu -3'
miRNA:   3'- cagCGCCGG-UGGcuCCGGCUGa--------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 51368 0.71 0.536533
Target:  5'- --gGCGGCCGCCccguccGGCCGGCgacaggCGCc -3'
miRNA:   3'- cagCGCCGGUGGcu----CCGGCUGaa----GCG- -5'
10832 5' -60.3 NC_002794.1 + 52916 0.74 0.356987
Target:  5'- cGUCGCcGCCGCCGucgcucGGCCGGCa-CGCg -3'
miRNA:   3'- -CAGCGcCGGUGGCu-----CCGGCUGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.