miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 194055 0.72 0.454635
Target:  5'- -cCGCcGCCGCCGAGagcGCCGcCUUCGUc -3'
miRNA:   3'- caGCGcCGGUGGCUC---CGGCuGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 194015 0.84 0.084374
Target:  5'- uUCGCGGCCGCCGccGCCGGCgccUCGCc -3'
miRNA:   3'- cAGCGCCGGUGGCucCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 193983 0.72 0.454635
Target:  5'- -cCGCGGCCgcuACCGccGCCcccGGCUUCGCc -3'
miRNA:   3'- caGCGCCGG---UGGCucCGG---CUGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 193201 0.69 0.642397
Target:  5'- gGUCGUGcGCCACC-AGGUacaGcacGCUUCGCu -3'
miRNA:   3'- -CAGCGC-CGGUGGcUCCGg--C---UGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 192461 0.69 0.652107
Target:  5'- aGUCGCGcGCCACC-AGcGCCGAgcCcUCGUc -3'
miRNA:   3'- -CAGCGC-CGGUGGcUC-CGGCU--GaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 192413 0.66 0.817072
Target:  5'- aGUCGaaacGCCGcgacggguCCGcGGCCGGCgcgUCGCg -3'
miRNA:   3'- -CAGCgc--CGGU--------GGCuCCGGCUGa--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 192347 0.7 0.593876
Target:  5'- uUCGCGGaccucggccuCCGCCGccGCCGACcgagCGCg -3'
miRNA:   3'- cAGCGCC----------GGUGGCucCGGCUGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 192236 0.67 0.728643
Target:  5'- aUCG-GcGCUGCCGucGCCGACggCGCg -3'
miRNA:   3'- cAGCgC-CGGUGGCucCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 191809 0.66 0.783103
Target:  5'- -cCGCucGGCCGCuCGAGGaCCGcgaGCU-CGCu -3'
miRNA:   3'- caGCG--CCGGUG-GCUCC-GGC---UGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 189847 0.69 0.613253
Target:  5'- gGUCuCGGCCGCgGAGccGUCGGCgucgUCGCc -3'
miRNA:   3'- -CAGcGCCGGUGgCUC--CGGCUGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 188792 0.67 0.728643
Target:  5'- --aGCGGCCggccccGCCGAGcGCCGuCcaggCGCa -3'
miRNA:   3'- cagCGCCGG------UGGCUC-CGGCuGaa--GCG- -5'
10832 5' -60.3 NC_002794.1 + 188370 0.68 0.690728
Target:  5'- --gGCGGCgGCCGAGGgCGuucucccggGCUucUCGCc -3'
miRNA:   3'- cagCGCCGgUGGCUCCgGC---------UGA--AGCG- -5'
10832 5' -60.3 NC_002794.1 + 188331 0.68 0.700292
Target:  5'- cGUCGCcGCCGCCGGcGGC--GCcgUCGCg -3'
miRNA:   3'- -CAGCGcCGGUGGCU-CCGgcUGa-AGCG- -5'
10832 5' -60.3 NC_002794.1 + 187588 0.71 0.490268
Target:  5'- -gCGCGGCCGCCGucGCgacgccCGGCgUCGCc -3'
miRNA:   3'- caGCGCCGGUGGCucCG------GCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 187477 0.66 0.825204
Target:  5'- -gCGCGcGCCggGCCGAGGacgaGGCcgCGCa -3'
miRNA:   3'- caGCGC-CGG--UGGCUCCgg--CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 187062 0.67 0.728643
Target:  5'- -cCGCGGCCcgccagguGCCGcAGGCUG-CU-CGCc -3'
miRNA:   3'- caGCGCCGG--------UGGC-UCCGGCuGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 186282 0.7 0.584223
Target:  5'- -gCGCGGCggCACCGcGGCCaGGCggccggUCGCc -3'
miRNA:   3'- caGCGCCG--GUGGCuCCGG-CUGa-----AGCG- -5'
10832 5' -60.3 NC_002794.1 + 186067 0.76 0.281245
Target:  5'- -cCGUGGCCACCGccGCCGccgcCUUCGCc -3'
miRNA:   3'- caGCGCCGGUGGCucCGGCu---GAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 185768 0.68 0.704103
Target:  5'- -gCGCGGCCGCCcgucacacgucGGCCGGCgcggggacccacaUCGCc -3'
miRNA:   3'- caGCGCCGGUGGcu---------CCGGCUGa------------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 185349 0.75 0.334985
Target:  5'- cUCGCGcGCCGCCGcgagcGGGCCGAacgcCGCg -3'
miRNA:   3'- cAGCGC-CGGUGGC-----UCCGGCUgaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.