miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10832 5' -60.3 NC_002794.1 + 185182 0.68 0.709804
Target:  5'- -gCGCGGUCGgCGcGGUCGGCgcggucaUCGCg -3'
miRNA:   3'- caGCGCCGGUgGCuCCGGCUGa------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 184186 0.66 0.80879
Target:  5'- -cCGCGGCgccCGgCGAGGCCcGCUccCGCc -3'
miRNA:   3'- caGCGCCG---GUgGCUCCGGcUGAa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 183859 0.76 0.294008
Target:  5'- cGUCGCGGCCGUCGGGGCCaccgccGACacCGCc -3'
miRNA:   3'- -CAGCGCCGGUGGCUCCGG------CUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 183607 0.68 0.709804
Target:  5'- --gGgGGCCGCgCGcGGCCGGCgccccCGCg -3'
miRNA:   3'- cagCgCCGGUG-GCuCCGGCUGaa---GCG- -5'
10832 5' -60.3 NC_002794.1 + 182966 0.74 0.340029
Target:  5'- --gGCGGCCggcuccucguucgaGCCGAcGGCCGgcGCUUCGCc -3'
miRNA:   3'- cagCGCCGG--------------UGGCU-CCGGC--UGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 182538 0.67 0.765356
Target:  5'- -gCGCGGCagcgacugCGCCGcGGCCGGCacCGUc -3'
miRNA:   3'- caGCGCCG--------GUGGCuCCGGCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 182192 0.67 0.756318
Target:  5'- -aCGgGGCC-UCGGcGCCGGCgUCGCg -3'
miRNA:   3'- caGCgCCGGuGGCUcCGGCUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 181831 0.67 0.756318
Target:  5'- uUCGCGGCCAggucCCG-GGC-GAgcUCGCa -3'
miRNA:   3'- cAGCGCCGGU----GGCuCCGgCUgaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 181531 0.73 0.40395
Target:  5'- uUCGCccGCCGCCGgcGGGCCGGCgcucucggUCGCc -3'
miRNA:   3'- cAGCGc-CGGUGGC--UCCGGCUGa-------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 180894 0.66 0.800362
Target:  5'- gGUCuCGGCCGCgGAcucGGCCG-CggucUCGCc -3'
miRNA:   3'- -CAGcGCCGGUGgCU---CCGGCuGa---AGCG- -5'
10832 5' -60.3 NC_002794.1 + 180283 0.68 0.709804
Target:  5'- cUCGCGGCCcgcGCCGccgcaacacGCCGGCcggCGCg -3'
miRNA:   3'- cAGCGCCGG---UGGCuc-------CGGCUGaa-GCG- -5'
10832 5' -60.3 NC_002794.1 + 156411 0.73 0.407218
Target:  5'- -cCGCGGCCGCgGccacGGCCGGCgggugagagaccggUCGCg -3'
miRNA:   3'- caGCGCCGGUGgCu---CCGGCUGa-------------AGCG- -5'
10832 5' -60.3 NC_002794.1 + 155935 0.69 0.642397
Target:  5'- cUUGCcGUCACCGGGGCU--CUUCGCc -3'
miRNA:   3'- cAGCGcCGGUGGCUCCGGcuGAAGCG- -5'
10832 5' -60.3 NC_002794.1 + 153664 0.71 0.517824
Target:  5'- cGUC-CGGCCGCCgguuguGAGGCuCGACg-CGCg -3'
miRNA:   3'- -CAGcGCCGGUGG------CUCCG-GCUGaaGCG- -5'
10832 5' -60.3 NC_002794.1 + 152202 0.66 0.791798
Target:  5'- gGUCGCGuuCCGCCcgGAGGCgucgGACgUCGCg -3'
miRNA:   3'- -CAGCGCc-GGUGG--CUCCGg---CUGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 151734 0.69 0.642397
Target:  5'- cGUCGuCGGCCGCC--GGUCG-CcUCGCg -3'
miRNA:   3'- -CAGC-GCCGGUGGcuCCGGCuGaAGCG- -5'
10832 5' -60.3 NC_002794.1 + 150589 0.66 0.783103
Target:  5'- cUCGgGcGCCcgaggacgGCCGGGcGCCGGCUcUGCg -3'
miRNA:   3'- cAGCgC-CGG--------UGGCUC-CGGCUGAaGCG- -5'
10832 5' -60.3 NC_002794.1 + 150405 0.66 0.791798
Target:  5'- gGUUGCGGCagaaGCCGuGGCCcGCgagGCu -3'
miRNA:   3'- -CAGCGCCGg---UGGCuCCGGcUGaagCG- -5'
10832 5' -60.3 NC_002794.1 + 150254 0.67 0.747181
Target:  5'- -cUGCGGCUcguGCCGcucGGUCGACUgacgcCGCa -3'
miRNA:   3'- caGCGCCGG---UGGCu--CCGGCUGAa----GCG- -5'
10832 5' -60.3 NC_002794.1 + 149964 0.66 0.783103
Target:  5'- -aCGUGGCCgaccuGCCGcGGaCCGGCggcCGCu -3'
miRNA:   3'- caGCGCCGG-----UGGCuCC-GGCUGaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.