miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10833 3' -60.7 NC_002794.1 + 111625 0.66 0.781686
Target:  5'- gGCCGcCGCGGcCGCcgccggucggGCGCCgcGGCcGCg -3'
miRNA:   3'- gUGGCuGCGCC-GCGa---------CGUGG--UCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 112735 0.66 0.781686
Target:  5'- aCGCggaaGGCGCGGUGCUccGCGgCGGCgggGUc -3'
miRNA:   3'- -GUGg---CUGCGCCGCGA--CGUgGUCGa--CG- -5'
10833 3' -60.7 NC_002794.1 + 179690 0.66 0.781686
Target:  5'- gACgGugGCGGCgGCgacggugGCgacGCCGGCgGCu -3'
miRNA:   3'- gUGgCugCGCCG-CGa------CG---UGGUCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 186847 0.66 0.781686
Target:  5'- aCAgCG-CGCgGGCGCUGC-CguGCaGCa -3'
miRNA:   3'- -GUgGCuGCG-CCGCGACGuGguCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 60034 0.66 0.781686
Target:  5'- aCGCCGACGCcgucuCGCUGCucaccuUCGGCcGCc -3'
miRNA:   3'- -GUGGCUGCGcc---GCGACGu-----GGUCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 41188 0.66 0.781686
Target:  5'- gGCCGAgCGUcgucgucacGGCGCUGCugccACCGGCc-- -3'
miRNA:   3'- gUGGCU-GCG---------CCGCGACG----UGGUCGacg -5'
10833 3' -60.7 NC_002794.1 + 191998 0.66 0.781686
Target:  5'- gGCCGGgacgguaGCGGCGgUG-GCCgcGGCUGCu -3'
miRNA:   3'- gUGGCUg------CGCCGCgACgUGG--UCGACG- -5'
10833 3' -60.7 NC_002794.1 + 71350 0.66 0.781686
Target:  5'- cCGCC-AgGCGGCGCagcaggUGCGgCAGCcGCc -3'
miRNA:   3'- -GUGGcUgCGCCGCG------ACGUgGUCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 106905 0.66 0.781686
Target:  5'- --aCGAgGCGcUGCUGCGCgAGUUGUa -3'
miRNA:   3'- gugGCUgCGCcGCGACGUGgUCGACG- -5'
10833 3' -60.7 NC_002794.1 + 106073 0.66 0.781686
Target:  5'- cCGCCGgcACGCGGCuuuuCUGCGCUacgucuaugGGgaGCg -3'
miRNA:   3'- -GUGGC--UGCGCCGc---GACGUGG---------UCgaCG- -5'
10833 3' -60.7 NC_002794.1 + 111989 0.66 0.781686
Target:  5'- cCACCGgcACGCccuGCGCgGuCACCAGUcgGCg -3'
miRNA:   3'- -GUGGC--UGCGc--CGCGaC-GUGGUCGa-CG- -5'
10833 3' -60.7 NC_002794.1 + 145316 0.66 0.781686
Target:  5'- aACCGGCgcgcggcggGCGGCGCUcGgGCCcgAGCggGCc -3'
miRNA:   3'- gUGGCUG---------CGCCGCGA-CgUGG--UCGa-CG- -5'
10833 3' -60.7 NC_002794.1 + 108404 0.66 0.781686
Target:  5'- -uCCGGCgGCGGCGCccaccacgGCGCCcaccccgcgaccGGCgGCa -3'
miRNA:   3'- guGGCUG-CGCCGCGa-------CGUGG------------UCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 44415 0.66 0.7808
Target:  5'- gACCGGC-CGGCGCcGagcggcucgacgaCACCGGC-GCg -3'
miRNA:   3'- gUGGCUGcGCCGCGaC-------------GUGGUCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 116892 0.66 0.7808
Target:  5'- gCGCCGGCGCcgucuccGGCgGCcGguCCGGCgucgGCu -3'
miRNA:   3'- -GUGGCUGCG-------CCG-CGaCguGGUCGa---CG- -5'
10833 3' -60.7 NC_002794.1 + 34715 0.66 0.772776
Target:  5'- cCGCCGGCGCcacgaGGCGCggGCgGCCgcagAGC-GCg -3'
miRNA:   3'- -GUGGCUGCG-----CCGCGa-CG-UGG----UCGaCG- -5'
10833 3' -60.7 NC_002794.1 + 34269 0.66 0.772776
Target:  5'- gACCGcGCGCaGGCgGCcaGCGCCAGCg-- -3'
miRNA:   3'- gUGGC-UGCG-CCG-CGa-CGUGGUCGacg -5'
10833 3' -60.7 NC_002794.1 + 189630 0.66 0.772776
Target:  5'- gGCCGAC-UGGCuagcuggcugGCUGacuaGCCGGCUGg -3'
miRNA:   3'- gUGGCUGcGCCG----------CGACg---UGGUCGACg -5'
10833 3' -60.7 NC_002794.1 + 181235 0.66 0.772776
Target:  5'- -uCCGGCGaCGGCGCgccuucCACCGcGCgUGCc -3'
miRNA:   3'- guGGCUGC-GCCGCGac----GUGGU-CG-ACG- -5'
10833 3' -60.7 NC_002794.1 + 187832 0.66 0.772776
Target:  5'- gCGCuCGGCuCGGCGCgccgagggcucUGC-CCAGCcGCg -3'
miRNA:   3'- -GUG-GCUGcGCCGCG-----------ACGuGGUCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.