miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10833 5' -48.8 NC_002794.1 + 149691 0.66 0.999752
Target:  5'- -gACUg--GCcGCGGGGGCCGCcugGCg -3'
miRNA:   3'- gaUGAagaUGuUGUUCCUGGCGca-CG- -5'
10833 5' -48.8 NC_002794.1 + 20985 0.66 0.999752
Target:  5'- -aGCggCgGCGGCAGcGACCGCG-GCg -3'
miRNA:   3'- gaUGaaGaUGUUGUUcCUGGCGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 56884 0.66 0.999752
Target:  5'- aUGuCUUCUACAucCAGGuGCCGCGcGUg -3'
miRNA:   3'- gAU-GAAGAUGUu-GUUCcUGGCGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 147923 0.66 0.999752
Target:  5'- cCUGC-UCaGCGACGGGGG-CGuCGUGUa -3'
miRNA:   3'- -GAUGaAGaUGUUGUUCCUgGC-GCACG- -5'
10833 5' -48.8 NC_002794.1 + 92311 0.66 0.999606
Target:  5'- -gGCUgggCgcggGCGGCGGGGGCCcggGCGgGCg -3'
miRNA:   3'- gaUGAa--Ga---UGUUGUUCCUGG---CGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 134366 0.66 0.999606
Target:  5'- -aGCgUCUACAACuuucguuucGACCGCG-GCg -3'
miRNA:   3'- gaUGaAGAUGUUGuuc------CUGGCGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 126185 0.66 0.999579
Target:  5'- gUGCUgaacuaucacgucaUCUACGuggGCGAGGGCCaGCG-GUa -3'
miRNA:   3'- gAUGA--------------AGAUGU---UGUUCCUGG-CGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 149725 0.66 0.99955
Target:  5'- cCUGCcucgCUACGGCGugccgguggagcggcGGGACCGC-UGUc -3'
miRNA:   3'- -GAUGaa--GAUGUUGU---------------UCCUGGCGcACG- -5'
10833 5' -48.8 NC_002794.1 + 37875 0.66 0.999508
Target:  5'- -gGCgUCUcggGCGGCGGGGGCgGUGgcgGCg -3'
miRNA:   3'- gaUGaAGA---UGUUGUUCCUGgCGCa--CG- -5'
10833 5' -48.8 NC_002794.1 + 132552 0.66 0.999508
Target:  5'- gUACUugaUCcGCGGCAuaguagccAGGACCGgGUGg -3'
miRNA:   3'- gAUGA---AGaUGUUGU--------UCCUGGCgCACg -5'
10833 5' -48.8 NC_002794.1 + 80867 0.66 0.999508
Target:  5'- uCUACUUCUu---CAA-GAgCGCGUGCc -3'
miRNA:   3'- -GAUGAAGAuguuGUUcCUgGCGCACG- -5'
10833 5' -48.8 NC_002794.1 + 100804 0.67 0.99944
Target:  5'- -cGCUUCUGCGccuacgugccgggcgGCGGGGGCCGgcagcCGgGCu -3'
miRNA:   3'- gaUGAAGAUGU---------------UGUUCCUGGC-----GCaCG- -5'
10833 5' -48.8 NC_002794.1 + 188395 0.67 0.99939
Target:  5'- -gGCUUCUcGCcGCAgacGGGACCGCcgccGCa -3'
miRNA:   3'- gaUGAAGA-UGuUGU---UCCUGGCGca--CG- -5'
10833 5' -48.8 NC_002794.1 + 90836 0.67 0.99939
Target:  5'- ----gUCggu-ACGAGGGCgGCGUGCu -3'
miRNA:   3'- gaugaAGauguUGUUCCUGgCGCACG- -5'
10833 5' -48.8 NC_002794.1 + 118815 0.67 0.99939
Target:  5'- -gGCUUgCUGCccGACGAGGACgagaugaagaGCGUGUc -3'
miRNA:   3'- gaUGAA-GAUG--UUGUUCCUGg---------CGCACG- -5'
10833 5' -48.8 NC_002794.1 + 40101 0.67 0.999248
Target:  5'- -gACaUCUugACGACGGGGGCgCGCGagaGCg -3'
miRNA:   3'- gaUGaAGA--UGUUGUUCCUG-GCGCa--CG- -5'
10833 5' -48.8 NC_002794.1 + 190747 0.67 0.999248
Target:  5'- -cGCcgUCU-CGACGGGGGCgGCGgccGCg -3'
miRNA:   3'- gaUGa-AGAuGUUGUUCCUGgCGCa--CG- -5'
10833 5' -48.8 NC_002794.1 + 118275 0.67 0.999248
Target:  5'- -gGCggCgccgGCGuCGGGGACCGCGccggGCg -3'
miRNA:   3'- gaUGaaGa---UGUuGUUCCUGGCGCa---CG- -5'
10833 5' -48.8 NC_002794.1 + 34249 0.67 0.999078
Target:  5'- -cGCggCUGCcgccGCAGgcGGACCGCGcGCa -3'
miRNA:   3'- gaUGaaGAUGu---UGUU--CCUGGCGCaCG- -5'
10833 5' -48.8 NC_002794.1 + 175101 0.67 0.998876
Target:  5'- uUACUUCcaaACggUGAGGAUCuucugcgcuguGCGUGCa -3'
miRNA:   3'- gAUGAAGa--UGuuGUUCCUGG-----------CGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.