miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10834 3' -58.1 NC_002794.1 + 42 0.66 0.870918
Target:  5'- cGCGggcUCUCGGacgaacggcCGACgCCCGCCACCg- -3'
miRNA:   3'- uCGUa--GGAGCU---------GUUG-GGGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 195195 0.66 0.870918
Target:  5'- cAGCG-CCgucaGGucCAGCCCCGCCAgCUGc -3'
miRNA:   3'- -UCGUaGGag--CU--GUUGGGGCGGUgGAU- -5'
10834 3' -58.1 NC_002794.1 + 144999 0.66 0.870918
Target:  5'- gGGCGUCCgccuggCGcaGCAGCUgCGCCACa-- -3'
miRNA:   3'- -UCGUAGGa-----GC--UGUUGGgGCGGUGgau -5'
10834 3' -58.1 NC_002794.1 + 94962 0.66 0.870918
Target:  5'- uGGCGUCCUggagcCGACGcgggggcuggaGCUCUGUCGCCg- -3'
miRNA:   3'- -UCGUAGGA-----GCUGU-----------UGGGGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 58020 0.66 0.870918
Target:  5'- gGGCcgCCgcCGGCGAaCCCGCCGCg-- -3'
miRNA:   3'- -UCGuaGGa-GCUGUUgGGGCGGUGgau -5'
10834 3' -58.1 NC_002794.1 + 133170 0.66 0.870918
Target:  5'- cGUGacUCgCUCGACGAUCCgGUCACCa- -3'
miRNA:   3'- uCGU--AG-GAGCUGUUGGGgCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 37712 0.66 0.870918
Target:  5'- cGCcuucUCCUCG-CGACCCgcgagcggcggCGCCGCCg- -3'
miRNA:   3'- uCGu---AGGAGCuGUUGGG-----------GCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 44562 0.66 0.868747
Target:  5'- cGGCGcCCgUUGACGucacgcgggaccgaGCCaCCGCCGCCUu -3'
miRNA:   3'- -UCGUaGG-AGCUGU--------------UGG-GGCGGUGGAu -5'
10834 3' -58.1 NC_002794.1 + 50740 0.66 0.863608
Target:  5'- cGGCcgCCUCGACucGCUcguCCGCC-CCg- -3'
miRNA:   3'- -UCGuaGGAGCUGu-UGG---GGCGGuGGau -5'
10834 3' -58.1 NC_002794.1 + 19305 0.66 0.863608
Target:  5'- cGCGUCgCU-GACcGCCCaCGCCGCgCUGg -3'
miRNA:   3'- uCGUAG-GAgCUGuUGGG-GCGGUG-GAU- -5'
10834 3' -58.1 NC_002794.1 + 63369 0.66 0.863608
Target:  5'- cGUcgCCcgCGcCGcuGCCCCGCCGCCc- -3'
miRNA:   3'- uCGuaGGa-GCuGU--UGGGGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 41192 0.66 0.863608
Target:  5'- gAGCGUCgUCGucACGGCgCUGCUGCCa- -3'
miRNA:   3'- -UCGUAGgAGC--UGUUGgGGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 33768 0.66 0.863608
Target:  5'- cGGCGagCUgcugaagcaCGACAGCCugugCCGCCACCa- -3'
miRNA:   3'- -UCGUagGA---------GCUGUUGG----GGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 66667 0.66 0.856098
Target:  5'- cGGCGUCgUgGucaACGGCCCCGgCGCCc- -3'
miRNA:   3'- -UCGUAGgAgC---UGUUGGGGCgGUGGau -5'
10834 3' -58.1 NC_002794.1 + 38703 0.66 0.856098
Target:  5'- cGCG-CCgUCGAgcGCCCCGgCCGCCg- -3'
miRNA:   3'- uCGUaGG-AGCUguUGGGGC-GGUGGau -5'
10834 3' -58.1 NC_002794.1 + 60647 0.66 0.856098
Target:  5'- cGGCGgcgCCggccaccCGGCGcgcGCCgCCGCCGCCUc -3'
miRNA:   3'- -UCGUa--GGa------GCUGU---UGG-GGCGGUGGAu -5'
10834 3' -58.1 NC_002794.1 + 83898 0.66 0.848393
Target:  5'- cGGCG-CC-CGACGAgCCCGgCACCc- -3'
miRNA:   3'- -UCGUaGGaGCUGUUgGGGCgGUGGau -5'
10834 3' -58.1 NC_002794.1 + 49205 0.66 0.848393
Target:  5'- cGCGUCCagaaauUCGAgGcGCCgCGCCGCCa- -3'
miRNA:   3'- uCGUAGG------AGCUgU-UGGgGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 127315 0.66 0.848393
Target:  5'- aGGCcgUCUCGACGacggagacgaGCgCCGCUGCCg- -3'
miRNA:   3'- -UCGuaGGAGCUGU----------UGgGGCGGUGGau -5'
10834 3' -58.1 NC_002794.1 + 60749 0.66 0.848393
Target:  5'- gAGUAUUuuaCUCGACcucugAGCgCCGCCGCCg- -3'
miRNA:   3'- -UCGUAG---GAGCUG-----UUGgGGCGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.