miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10834 5' -65.8 NC_002794.1 + 91569 0.66 0.581465
Target:  5'- -gCCGGCGCcgcugaugaacuacuCCGaGUGGCCGcugGUGCg -3'
miRNA:   3'- gaGGCCGCG---------------GGCgCACCGGCcg-CACG- -5'
10834 5' -65.8 NC_002794.1 + 66575 0.66 0.577751
Target:  5'- -gCCGGCGCCgGCGgcaGCCccgaGUGCu -3'
miRNA:   3'- gaGGCCGCGGgCGCac-CGGccg-CACG- -5'
10834 5' -65.8 NC_002794.1 + 178826 0.66 0.577751
Target:  5'- aCUCgGGUcuCCCGCG-GGUCucGCGUGCc -3'
miRNA:   3'- -GAGgCCGc-GGGCGCaCCGGc-CGCACG- -5'
10834 5' -65.8 NC_002794.1 + 20630 0.66 0.577751
Target:  5'- gCUCCGGCuGCCuCGac-GGCUGGUGcgaGCa -3'
miRNA:   3'- -GAGGCCG-CGG-GCgcaCCGGCCGCa--CG- -5'
10834 5' -65.8 NC_002794.1 + 32512 0.66 0.577751
Target:  5'- -gCCGGCuCCCGcCGU-GCCGGUGaugaGCa -3'
miRNA:   3'- gaGGCCGcGGGC-GCAcCGGCCGCa---CG- -5'
10834 5' -65.8 NC_002794.1 + 119933 0.66 0.577751
Target:  5'- --aCGGCGCcgaucuccagCCGCGccagcaGGUCGaGCGUGCu -3'
miRNA:   3'- gagGCCGCG----------GGCGCa-----CCGGC-CGCACG- -5'
10834 5' -65.8 NC_002794.1 + 116894 0.66 0.568488
Target:  5'- -gCCGGCGCCgucuccgGCGgccGGuCCGGCGUc- -3'
miRNA:   3'- gaGGCCGCGGg------CGCa--CC-GGCCGCAcg -5'
10834 5' -65.8 NC_002794.1 + 49604 0.66 0.568488
Target:  5'- -aUCGGCGaCgGCGgGcGCCGGCG-GCg -3'
miRNA:   3'- gaGGCCGCgGgCGCaC-CGGCCGCaCG- -5'
10834 5' -65.8 NC_002794.1 + 1949 0.66 0.562948
Target:  5'- gUCCgaGGCGCCCGCcggccuuauacggGGUCcgggGGCGUGUu -3'
miRNA:   3'- gAGG--CCGCGGGCGca-----------CCGG----CCGCACG- -5'
10834 5' -65.8 NC_002794.1 + 2011 0.66 0.562948
Target:  5'- gUCCgaGGCGCCCGCcggccuuauacggGGUCcgggGGCGUGUu -3'
miRNA:   3'- gAGG--CCGCGGGCGca-----------CCGG----CCGCACG- -5'
10834 5' -65.8 NC_002794.1 + 151601 0.66 0.562948
Target:  5'- -gCCGcGgGCCCGCGguuccucggcugacGGCCGGCacuugGCu -3'
miRNA:   3'- gaGGC-CgCGGGCGCa-------------CCGGCCGca---CG- -5'
10834 5' -65.8 NC_002794.1 + 68971 0.66 0.559263
Target:  5'- cCUCCGcGgG-CCGCGacGCCGGCGUcgacGCu -3'
miRNA:   3'- -GAGGC-CgCgGGCGCacCGGCCGCA----CG- -5'
10834 5' -65.8 NC_002794.1 + 55427 0.66 0.559263
Target:  5'- -cCCGGCGUCCGCGUcGCCccgcaGCGa-- -3'
miRNA:   3'- gaGGCCGCGGGCGCAcCGGc----CGCacg -5'
10834 5' -65.8 NC_002794.1 + 107516 0.66 0.559263
Target:  5'- -gCCGGUcgacgccgacgGCCgGCGcgGcGCCGGCG-GCg -3'
miRNA:   3'- gaGGCCG-----------CGGgCGCa-C-CGGCCGCaCG- -5'
10834 5' -65.8 NC_002794.1 + 46218 0.66 0.55008
Target:  5'- uUCCGGCcagcucguccaGCUCGCuc-GCCGGCG-GCu -3'
miRNA:   3'- gAGGCCG-----------CGGGCGcacCGGCCGCaCG- -5'
10834 5' -65.8 NC_002794.1 + 24075 0.66 0.55008
Target:  5'- -cCCGuGCGCCCG---GGCgGGCGUcGCc -3'
miRNA:   3'- gaGGC-CGCGGGCgcaCCGgCCGCA-CG- -5'
10834 5' -65.8 NC_002794.1 + 44444 0.66 0.55008
Target:  5'- -aCCGGCgcGCCCGCccggacGUCGGCG-GCg -3'
miRNA:   3'- gaGGCCG--CGGGCGcac---CGGCCGCaCG- -5'
10834 5' -65.8 NC_002794.1 + 107150 0.66 0.549164
Target:  5'- -gUCGGCGCCCccgGCGagGGCCGccgcuacGCG-GCg -3'
miRNA:   3'- gaGGCCGCGGG---CGCa-CCGGC-------CGCaCG- -5'
10834 5' -65.8 NC_002794.1 + 766 0.66 0.548249
Target:  5'- -gCCGG-GCCCGCGgugcauuUGGCaCGGUgccaaccGUGCc -3'
miRNA:   3'- gaGGCCgCGGGCGC-------ACCG-GCCG-------CACG- -5'
10834 5' -65.8 NC_002794.1 + 123015 0.66 0.540944
Target:  5'- -gCCGGCuGgCCGuCGUGuuccccgacaacGUCGGCGUGUa -3'
miRNA:   3'- gaGGCCG-CgGGC-GCAC------------CGGCCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.