miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 3' -58.7 NC_002794.1 + 184465 0.66 0.844664
Target:  5'- cCCgcggGC-CGCGCgaacgGC-GCGCGGGGCc -3'
miRNA:   3'- aGGa---CGaGUGCGa----CGaCGCGUUCCGc -5'
10835 3' -58.7 NC_002794.1 + 101785 0.66 0.844664
Target:  5'- aUCCUGUcCGagUGCUGCgccgcugguugGCGCAGcGGCGc -3'
miRNA:   3'- -AGGACGaGU--GCGACGa----------CGCGUU-CCGC- -5'
10835 3' -58.7 NC_002794.1 + 13252 0.66 0.844664
Target:  5'- -gCUGCUCcuCGCcggGCUGUGguGGaGCGg -3'
miRNA:   3'- agGACGAGu-GCGa--CGACGCguUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 108240 0.66 0.8367
Target:  5'- aUCC-GCUCuACGUga-UGUGCAAGGUGu -3'
miRNA:   3'- -AGGaCGAG-UGCGacgACGCGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 18058 0.66 0.828558
Target:  5'- aUCUGCUgCACGCcgccugucugUGCgugucggugGCGCAgaAGGCGc -3'
miRNA:   3'- aGGACGA-GUGCG----------ACGa--------CGCGU--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 33676 0.66 0.828558
Target:  5'- ---cGCUCgcuGCGCUcGCUGCGCcuguucguGGCGg -3'
miRNA:   3'- aggaCGAG---UGCGA-CGACGCGuu------CCGC- -5'
10835 3' -58.7 NC_002794.1 + 147958 0.66 0.820245
Target:  5'- cUCCggGCUCcgaGCGCgUGCaGCGUguGGCGg -3'
miRNA:   3'- -AGGa-CGAG---UGCG-ACGaCGCGuuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 126355 0.66 0.820245
Target:  5'- gUCCcgGCUCcgauuuCGCcGCUGCGUG-GGCGc -3'
miRNA:   3'- -AGGa-CGAGu-----GCGaCGACGCGUuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 125822 0.66 0.820245
Target:  5'- cUCUGCguccucggCGCccuGCUGCUGCGCugccGGCu -3'
miRNA:   3'- aGGACGa-------GUG---CGACGACGCGuu--CCGc -5'
10835 3' -58.7 NC_002794.1 + 58699 0.66 0.820245
Target:  5'- -gCUGCUCGgGCUGgUGCGCuuccuGCa -3'
miRNA:   3'- agGACGAGUgCGACgACGCGuuc--CGc -5'
10835 3' -58.7 NC_002794.1 + 117419 0.66 0.811768
Target:  5'- aCCcGCUgCA-GgaGCUGcCGCGAGGCGu -3'
miRNA:   3'- aGGaCGA-GUgCgaCGAC-GCGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 44215 0.66 0.811768
Target:  5'- gUCCgGCUCGgGCgccgaggGCUcgGUGCcGGGCGg -3'
miRNA:   3'- -AGGaCGAGUgCGa------CGA--CGCGuUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 58439 0.66 0.811768
Target:  5'- gCCgagGC-CACGCUGCgccuggccGCGCu-GGCGc -3'
miRNA:   3'- aGGa--CGaGUGCGACGa-------CGCGuuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 151918 0.66 0.803135
Target:  5'- gCCgaGCUC-CGuCUGCgGCGCAAGcGCu -3'
miRNA:   3'- aGGa-CGAGuGC-GACGaCGCGUUC-CGc -5'
10835 3' -58.7 NC_002794.1 + 141527 0.66 0.803135
Target:  5'- gCCUGggCGgGCUGCU-CGCcgAAGGCGc -3'
miRNA:   3'- aGGACgaGUgCGACGAcGCG--UUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 107862 0.67 0.785434
Target:  5'- aCCUGCUCcacugcauCGCggagGCgGCGCGgcGGGUGc -3'
miRNA:   3'- aGGACGAGu-------GCGa---CGaCGCGU--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 35551 0.67 0.767204
Target:  5'- cCCggcGCUCGCGC-GC-GCGCGuGGUGg -3'
miRNA:   3'- aGGa--CGAGUGCGaCGaCGCGUuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 182580 0.67 0.757913
Target:  5'- cUCCgUGCgggcgacgauggUCGCGUUGUcGCGCAAGaGCGc -3'
miRNA:   3'- -AGG-ACG------------AGUGCGACGaCGCGUUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 20785 0.67 0.757913
Target:  5'- cUCgUGUUCAUGCUGUgGgGCAAgcuGGCGc -3'
miRNA:   3'- -AGgACGAGUGCGACGaCgCGUU---CCGC- -5'
10835 3' -58.7 NC_002794.1 + 150076 0.67 0.748515
Target:  5'- ---cGCUCugGCcuucCUGCGCuGGGCGg -3'
miRNA:   3'- aggaCGAGugCGac--GACGCGuUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.