miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 3' -58.7 NC_002794.1 + 111748 0.68 0.729434
Target:  5'- gUCgaGCUgGCGCcGCgcgGCGCcgucGGGGCGg -3'
miRNA:   3'- -AGgaCGAgUGCGaCGa--CGCG----UUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 92610 0.68 0.719769
Target:  5'- gCCUuCUCGcCGCUGCUgGCGCAccaguacuaccGGGCc -3'
miRNA:   3'- aGGAcGAGU-GCGACGA-CGCGU-----------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 11109 0.68 0.710032
Target:  5'- uUCCUGCUCuACgGCgUGCUGCGcCAAcGCc -3'
miRNA:   3'- -AGGACGAG-UG-CG-ACGACGC-GUUcCGc -5'
10835 3' -58.7 NC_002794.1 + 192134 0.68 0.710032
Target:  5'- -gCUGCUguUGCUGCUgccgGCGCGGucgcGGCGg -3'
miRNA:   3'- agGACGAguGCGACGA----CGCGUU----CCGC- -5'
10835 3' -58.7 NC_002794.1 + 184941 0.68 0.710032
Target:  5'- gUCCUGC-CGCaGCUGCgccggcccGCGCAgccgcucgucGGGCa -3'
miRNA:   3'- -AGGACGaGUG-CGACGa-------CGCGU----------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 34241 0.68 0.710032
Target:  5'- -gCUGCaCGCGCgGCUGCcGCcgcAGGCGg -3'
miRNA:   3'- agGACGaGUGCGaCGACG-CGu--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 187935 0.69 0.670535
Target:  5'- aCCgucGCgUCACGCgUGCgcGCGCGAGcGCGg -3'
miRNA:   3'- aGGa--CG-AGUGCG-ACGa-CGCGUUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 140918 0.69 0.640568
Target:  5'- aCCUGCaggCGCGCUGCcUGCGCAc---- -3'
miRNA:   3'- aGGACGa--GUGCGACG-ACGCGUuccgc -5'
10835 3' -58.7 NC_002794.1 + 130126 0.69 0.640568
Target:  5'- cCUUGCgagauauuagACGCUGCgcgGCGCGAGcGCGg -3'
miRNA:   3'- aGGACGag--------UGCGACGa--CGCGUUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 147674 0.7 0.629555
Target:  5'- gCCUGCUCGCGCUcgaggacccggcgGCgaugcgGCGCAcGuGCGc -3'
miRNA:   3'- aGGACGAGUGCGA-------------CGa-----CGCGUuC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 95537 0.7 0.600556
Target:  5'- aCCUcUUCACGCUcaGCgagGCGCAgcuGGGCGa -3'
miRNA:   3'- aGGAcGAGUGCGA--CGa--CGCGU---UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 58544 0.7 0.590592
Target:  5'- gCCgcgGCgcgCGCGCUGCUgGCGCGcuGCGc -3'
miRNA:   3'- aGGa--CGa--GUGCGACGA-CGCGUucCGC- -5'
10835 3' -58.7 NC_002794.1 + 127536 0.7 0.580656
Target:  5'- aUCCUGCUgGCGCUGUUGgucaUGCu-GGCc -3'
miRNA:   3'- -AGGACGAgUGCGACGAC----GCGuuCCGc -5'
10835 3' -58.7 NC_002794.1 + 12593 0.71 0.570756
Target:  5'- gCCUGCgucccCACGCUGCgccaccaGCGCGucugGGGCc -3'
miRNA:   3'- aGGACGa----GUGCGACGa------CGCGU----UCCGc -5'
10835 3' -58.7 NC_002794.1 + 12696 0.71 0.551086
Target:  5'- gCCUGUUCAUGUcggccguggGCUGCGCGuuccgcGGCGa -3'
miRNA:   3'- aGGACGAGUGCGa--------CGACGCGUu-----CCGC- -5'
10835 3' -58.7 NC_002794.1 + 123612 0.71 0.541328
Target:  5'- gCCUGUgggACGC-GCUGCGCGAGGaCa -3'
miRNA:   3'- aGGACGag-UGCGaCGACGCGUUCC-Gc -5'
10835 3' -58.7 NC_002794.1 + 57457 0.71 0.53744
Target:  5'- aCCUGCUCcacGCGCUGCgcccgcucgucacGCGCGaccAGGUGc -3'
miRNA:   3'- aGGACGAG---UGCGACGa------------CGCGU---UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 38260 0.71 0.532595
Target:  5'- cUCCUGCgugaggcgcggccccCGCGCgacguaGCUGUGCAGGGUa -3'
miRNA:   3'- -AGGACGa--------------GUGCGa-----CGACGCGUUCCGc -5'
10835 3' -58.7 NC_002794.1 + 59684 0.72 0.469417
Target:  5'- gCCUGCacccgggcuucgcccUCACGCUGgUGCGCAccgacaccuucgAGGCc -3'
miRNA:   3'- aGGACG---------------AGUGCGACgACGCGU------------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 113971 0.73 0.412842
Target:  5'- cUCCUGCUCGCGCcGCUccucgagcagccGUuCGAGGCGc -3'
miRNA:   3'- -AGGACGAGUGCGaCGA------------CGcGUUCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.