miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 3' -58.7 NC_002794.1 + 107862 0.67 0.785434
Target:  5'- aCCUGCUCcacugcauCGCggagGCgGCGCGgcGGGUGc -3'
miRNA:   3'- aGGACGAGu-------GCGa---CGaCGCGU--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 108240 0.66 0.8367
Target:  5'- aUCC-GCUCuACGUga-UGUGCAAGGUGu -3'
miRNA:   3'- -AGGaCGAG-UGCGacgACGCGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 111748 0.68 0.729434
Target:  5'- gUCgaGCUgGCGCcGCgcgGCGCcgucGGGGCGg -3'
miRNA:   3'- -AGgaCGAgUGCGaCGa--CGCG----UUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 113971 0.73 0.412842
Target:  5'- cUCCUGCUCGCGCcGCUccucgagcagccGUuCGAGGCGc -3'
miRNA:   3'- -AGGACGAGUGCGaCGA------------CGcGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 117419 0.66 0.811768
Target:  5'- aCCcGCUgCA-GgaGCUGcCGCGAGGCGu -3'
miRNA:   3'- aGGaCGA-GUgCgaCGAC-GCGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 123612 0.71 0.541328
Target:  5'- gCCUGUgggACGC-GCUGCGCGAGGaCa -3'
miRNA:   3'- aGGACGag-UGCGaCGACGCGUUCC-Gc -5'
10835 3' -58.7 NC_002794.1 + 125822 0.66 0.820245
Target:  5'- cUCUGCguccucggCGCccuGCUGCUGCGCugccGGCu -3'
miRNA:   3'- aGGACGa-------GUG---CGACGACGCGuu--CCGc -5'
10835 3' -58.7 NC_002794.1 + 126355 0.66 0.820245
Target:  5'- gUCCcgGCUCcgauuuCGCcGCUGCGUG-GGCGc -3'
miRNA:   3'- -AGGa-CGAGu-----GCGaCGACGCGUuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 127536 0.7 0.580656
Target:  5'- aUCCUGCUgGCGCUGUUGgucaUGCu-GGCc -3'
miRNA:   3'- -AGGACGAgUGCGACGAC----GCGuuCCGc -5'
10835 3' -58.7 NC_002794.1 + 130126 0.69 0.640568
Target:  5'- cCUUGCgagauauuagACGCUGCgcgGCGCGAGcGCGg -3'
miRNA:   3'- aGGACGag--------UGCGACGa--CGCGUUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 140918 0.69 0.640568
Target:  5'- aCCUGCaggCGCGCUGCcUGCGCAc---- -3'
miRNA:   3'- aGGACGa--GUGCGACG-ACGCGUuccgc -5'
10835 3' -58.7 NC_002794.1 + 141527 0.66 0.803135
Target:  5'- gCCUGggCGgGCUGCU-CGCcgAAGGCGc -3'
miRNA:   3'- aGGACgaGUgCGACGAcGCG--UUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 147674 0.7 0.629555
Target:  5'- gCCUGCUCGCGCUcgaggacccggcgGCgaugcgGCGCAcGuGCGc -3'
miRNA:   3'- aGGACGAGUGCGA-------------CGa-----CGCGUuC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 147958 0.66 0.820245
Target:  5'- cUCCggGCUCcgaGCGCgUGCaGCGUguGGCGg -3'
miRNA:   3'- -AGGa-CGAG---UGCG-ACGaCGCGuuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 150076 0.67 0.748515
Target:  5'- ---cGCUCugGCcuucCUGCGCuGGGCGg -3'
miRNA:   3'- aggaCGAGugCGac--GACGCGuUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 151918 0.66 0.803135
Target:  5'- gCCgaGCUC-CGuCUGCgGCGCAAGcGCu -3'
miRNA:   3'- aGGa-CGAGuGC-GACGaCGCGUUC-CGc -5'
10835 3' -58.7 NC_002794.1 + 182580 0.67 0.757913
Target:  5'- cUCCgUGCgggcgacgauggUCGCGUUGUcGCGCAAGaGCGc -3'
miRNA:   3'- -AGG-ACG------------AGUGCGACGaCGCGUUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 184465 0.66 0.844664
Target:  5'- cCCgcggGC-CGCGCgaacgGC-GCGCGGGGCc -3'
miRNA:   3'- aGGa---CGaGUGCGa----CGaCGCGUUCCGc -5'
10835 3' -58.7 NC_002794.1 + 184941 0.68 0.710032
Target:  5'- gUCCUGC-CGCaGCUGCgccggcccGCGCAgccgcucgucGGGCa -3'
miRNA:   3'- -AGGACGaGUG-CGACGa-------CGCGU----------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 187935 0.69 0.670535
Target:  5'- aCCgucGCgUCACGCgUGCgcGCGCGAGcGCGg -3'
miRNA:   3'- aGGa--CG-AGUGCG-ACGa-CGCGUUC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.