Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10835 | 3' | -58.7 | NC_002794.1 | + | 192134 | 0.68 | 0.710032 |
Target: 5'- -gCUGCUguUGCUGCUgccgGCGCGGucgcGGCGg -3' miRNA: 3'- agGACGAguGCGACGA----CGCGUU----CCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 187935 | 0.69 | 0.670535 |
Target: 5'- aCCgucGCgUCACGCgUGCgcGCGCGAGcGCGg -3' miRNA: 3'- aGGa--CG-AGUGCG-ACGa-CGCGUUC-CGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 184941 | 0.68 | 0.710032 |
Target: 5'- gUCCUGC-CGCaGCUGCgccggcccGCGCAgccgcucgucGGGCa -3' miRNA: 3'- -AGGACGaGUG-CGACGa-------CGCGU----------UCCGc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 184465 | 0.66 | 0.844664 |
Target: 5'- cCCgcggGC-CGCGCgaacgGC-GCGCGGGGCc -3' miRNA: 3'- aGGa---CGaGUGCGa----CGaCGCGUUCCGc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 182580 | 0.67 | 0.757913 |
Target: 5'- cUCCgUGCgggcgacgauggUCGCGUUGUcGCGCAAGaGCGc -3' miRNA: 3'- -AGG-ACG------------AGUGCGACGaCGCGUUC-CGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 151918 | 0.66 | 0.803135 |
Target: 5'- gCCgaGCUC-CGuCUGCgGCGCAAGcGCu -3' miRNA: 3'- aGGa-CGAGuGC-GACGaCGCGUUC-CGc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 150076 | 0.67 | 0.748515 |
Target: 5'- ---cGCUCugGCcuucCUGCGCuGGGCGg -3' miRNA: 3'- aggaCGAGugCGac--GACGCGuUCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 147958 | 0.66 | 0.820245 |
Target: 5'- cUCCggGCUCcgaGCGCgUGCaGCGUguGGCGg -3' miRNA: 3'- -AGGa-CGAG---UGCG-ACGaCGCGuuCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 147674 | 0.7 | 0.629555 |
Target: 5'- gCCUGCUCGCGCUcgaggacccggcgGCgaugcgGCGCAcGuGCGc -3' miRNA: 3'- aGGACGAGUGCGA-------------CGa-----CGCGUuC-CGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 141527 | 0.66 | 0.803135 |
Target: 5'- gCCUGggCGgGCUGCU-CGCcgAAGGCGc -3' miRNA: 3'- aGGACgaGUgCGACGAcGCG--UUCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 140918 | 0.69 | 0.640568 |
Target: 5'- aCCUGCaggCGCGCUGCcUGCGCAc---- -3' miRNA: 3'- aGGACGa--GUGCGACG-ACGCGUuccgc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 130126 | 0.69 | 0.640568 |
Target: 5'- cCUUGCgagauauuagACGCUGCgcgGCGCGAGcGCGg -3' miRNA: 3'- aGGACGag--------UGCGACGa--CGCGUUC-CGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 127536 | 0.7 | 0.580656 |
Target: 5'- aUCCUGCUgGCGCUGUUGgucaUGCu-GGCc -3' miRNA: 3'- -AGGACGAgUGCGACGAC----GCGuuCCGc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 126355 | 0.66 | 0.820245 |
Target: 5'- gUCCcgGCUCcgauuuCGCcGCUGCGUG-GGCGc -3' miRNA: 3'- -AGGa-CGAGu-----GCGaCGACGCGUuCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 125822 | 0.66 | 0.820245 |
Target: 5'- cUCUGCguccucggCGCccuGCUGCUGCGCugccGGCu -3' miRNA: 3'- aGGACGa-------GUG---CGACGACGCGuu--CCGc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 123612 | 0.71 | 0.541328 |
Target: 5'- gCCUGUgggACGC-GCUGCGCGAGGaCa -3' miRNA: 3'- aGGACGag-UGCGaCGACGCGUUCC-Gc -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 117419 | 0.66 | 0.811768 |
Target: 5'- aCCcGCUgCA-GgaGCUGcCGCGAGGCGu -3' miRNA: 3'- aGGaCGA-GUgCgaCGAC-GCGUUCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 113971 | 0.73 | 0.412842 |
Target: 5'- cUCCUGCUCGCGCcGCUccucgagcagccGUuCGAGGCGc -3' miRNA: 3'- -AGGACGAGUGCGaCGA------------CGcGUUCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 111748 | 0.68 | 0.729434 |
Target: 5'- gUCgaGCUgGCGCcGCgcgGCGCcgucGGGGCGg -3' miRNA: 3'- -AGgaCGAgUGCGaCGa--CGCG----UUCCGC- -5' |
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10835 | 3' | -58.7 | NC_002794.1 | + | 108240 | 0.66 | 0.8367 |
Target: 5'- aUCC-GCUCuACGUga-UGUGCAAGGUGu -3' miRNA: 3'- -AGGaCGAG-UGCGacgACGCGUUCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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