miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 3' -58.7 NC_002794.1 + 107862 0.67 0.785434
Target:  5'- aCCUGCUCcacugcauCGCggagGCgGCGCGgcGGGUGc -3'
miRNA:   3'- aGGACGAGu-------GCGa---CGaCGCGU--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 101785 0.66 0.844664
Target:  5'- aUCCUGUcCGagUGCUGCgccgcugguugGCGCAGcGGCGc -3'
miRNA:   3'- -AGGACGaGU--GCGACGa----------CGCGUU-CCGC- -5'
10835 3' -58.7 NC_002794.1 + 95537 0.7 0.600556
Target:  5'- aCCUcUUCACGCUcaGCgagGCGCAgcuGGGCGa -3'
miRNA:   3'- aGGAcGAGUGCGA--CGa--CGCGU---UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 92610 0.68 0.719769
Target:  5'- gCCUuCUCGcCGCUGCUgGCGCAccaguacuaccGGGCc -3'
miRNA:   3'- aGGAcGAGU-GCGACGA-CGCGU-----------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 59684 0.72 0.469417
Target:  5'- gCCUGCacccgggcuucgcccUCACGCUGgUGCGCAccgacaccuucgAGGCc -3'
miRNA:   3'- aGGACG---------------AGUGCGACgACGCGU------------UCCGc -5'
10835 3' -58.7 NC_002794.1 + 58699 0.66 0.820245
Target:  5'- -gCUGCUCGgGCUGgUGCGCuuccuGCa -3'
miRNA:   3'- agGACGAGUgCGACgACGCGuuc--CGc -5'
10835 3' -58.7 NC_002794.1 + 58544 0.7 0.590592
Target:  5'- gCCgcgGCgcgCGCGCUGCUgGCGCGcuGCGc -3'
miRNA:   3'- aGGa--CGa--GUGCGACGA-CGCGUucCGC- -5'
10835 3' -58.7 NC_002794.1 + 58439 0.66 0.811768
Target:  5'- gCCgagGC-CACGCUGCgccuggccGCGCu-GGCGc -3'
miRNA:   3'- aGGa--CGaGUGCGACGa-------CGCGuuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 57457 0.71 0.53744
Target:  5'- aCCUGCUCcacGCGCUGCgcccgcucgucacGCGCGaccAGGUGc -3'
miRNA:   3'- aGGACGAG---UGCGACGa------------CGCGU---UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 57147 1.08 0.00212
Target:  5'- uUCCUGCUCACGCUGCUGCGCAAGGCGc -3'
miRNA:   3'- -AGGACGAGUGCGACGACGCGUUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 44215 0.66 0.811768
Target:  5'- gUCCgGCUCGgGCgccgaggGCUcgGUGCcGGGCGg -3'
miRNA:   3'- -AGGaCGAGUgCGa------CGA--CGCGuUCCGC- -5'
10835 3' -58.7 NC_002794.1 + 38260 0.71 0.532595
Target:  5'- cUCCUGCgugaggcgcggccccCGCGCgacguaGCUGUGCAGGGUa -3'
miRNA:   3'- -AGGACGa--------------GUGCGa-----CGACGCGUUCCGc -5'
10835 3' -58.7 NC_002794.1 + 35551 0.67 0.767204
Target:  5'- cCCggcGCUCGCGC-GC-GCGCGuGGUGg -3'
miRNA:   3'- aGGa--CGAGUGCGaCGaCGCGUuCCGC- -5'
10835 3' -58.7 NC_002794.1 + 34241 0.68 0.710032
Target:  5'- -gCUGCaCGCGCgGCUGCcGCcgcAGGCGg -3'
miRNA:   3'- agGACGaGUGCGaCGACG-CGu--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 33676 0.66 0.828558
Target:  5'- ---cGCUCgcuGCGCUcGCUGCGCcuguucguGGCGg -3'
miRNA:   3'- aggaCGAG---UGCGA-CGACGCGuu------CCGC- -5'
10835 3' -58.7 NC_002794.1 + 20785 0.67 0.757913
Target:  5'- cUCgUGUUCAUGCUGUgGgGCAAgcuGGCGc -3'
miRNA:   3'- -AGgACGAGUGCGACGaCgCGUU---CCGC- -5'
10835 3' -58.7 NC_002794.1 + 18058 0.66 0.828558
Target:  5'- aUCUGCUgCACGCcgccugucugUGCgugucggugGCGCAgaAGGCGc -3'
miRNA:   3'- aGGACGA-GUGCG----------ACGa--------CGCGU--UCCGC- -5'
10835 3' -58.7 NC_002794.1 + 13252 0.66 0.844664
Target:  5'- -gCUGCUCcuCGCcggGCUGUGguGGaGCGg -3'
miRNA:   3'- agGACGAGu-GCGa--CGACGCguUC-CGC- -5'
10835 3' -58.7 NC_002794.1 + 12696 0.71 0.551086
Target:  5'- gCCUGUUCAUGUcggccguggGCUGCGCGuuccgcGGCGa -3'
miRNA:   3'- aGGACGAGUGCGa--------CGACGCGUu-----CCGC- -5'
10835 3' -58.7 NC_002794.1 + 12593 0.71 0.570756
Target:  5'- gCCUGCgucccCACGCUGCgccaccaGCGCGucugGGGCc -3'
miRNA:   3'- aGGACGa----GUGCGACGa------CGCGU----UCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.