miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 5' -58.6 NC_002794.1 + 126349 0.66 0.83295
Target:  5'- cUUCGUGUcccgGCuccGAuuucgcCGCUGCGUGGGCGc -3'
miRNA:   3'- -AAGCACGa---CGu--CU------GCGACGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 64085 0.66 0.83295
Target:  5'- -aCGUGaCcaaagucaccgUGCAGACGCgaccgGCGCGucuGCAc -3'
miRNA:   3'- aaGCAC-G-----------ACGUCUGCGa----CGCGCu--CGU- -5'
10835 5' -58.6 NC_002794.1 + 135256 0.66 0.832127
Target:  5'- gUCGUGUUaucguucGCgAGACGagcGCGCGAGCc -3'
miRNA:   3'- aAGCACGA-------CG-UCUGCga-CGCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 101721 0.66 0.824645
Target:  5'- gUUCGUGgUGCAcGugGgCcaggGCGUGAGCu -3'
miRNA:   3'- -AAGCACgACGU-CugC-Ga---CGCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 57921 0.66 0.81958
Target:  5'- -gCGUGCUGCagaAGcucgacuucgccgacGCGCUGCGC-AGCc -3'
miRNA:   3'- aaGCACGACG---UC---------------UGCGACGCGcUCGu -5'
10835 5' -58.6 NC_002794.1 + 36560 0.66 0.816169
Target:  5'- -cCGUccGCUGCAGacacGCGCcGC-CGAGCAg -3'
miRNA:   3'- aaGCA--CGACGUC----UGCGaCGcGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 117413 0.66 0.789794
Target:  5'- gUCGcgacccGCUGCAGGaGCUGCcGCGAGgCGu -3'
miRNA:   3'- aAGCa-----CGACGUCUgCGACG-CGCUC-GU- -5'
10835 5' -58.6 NC_002794.1 + 90723 0.66 0.789794
Target:  5'- -aCGUGCUcGCGGcccuguCGCUGUGCGAcCGg -3'
miRNA:   3'- aaGCACGA-CGUCu-----GCGACGCGCUcGU- -5'
10835 5' -58.6 NC_002794.1 + 111193 0.67 0.770576
Target:  5'- cUCGaagagguUGCcGUAG-CGCUGCGCGuAGCGg -3'
miRNA:   3'- aAGC-------ACGaCGUCuGCGACGCGC-UCGU- -5'
10835 5' -58.6 NC_002794.1 + 20633 0.67 0.762173
Target:  5'- -cCG-GCUGCcucGACgGCUgGUGCGAGCAa -3'
miRNA:   3'- aaGCaCGACGu--CUG-CGA-CGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 91333 0.67 0.752729
Target:  5'- -aCGgcGCUGgguCAGGCGCUGCGCuucggccacaccGAGCAc -3'
miRNA:   3'- aaGCa-CGAC---GUCUGCGACGCG------------CUCGU- -5'
10835 5' -58.6 NC_002794.1 + 58554 0.67 0.743181
Target:  5'- -gCGcGCUGCuGgcGCGCUGCGCGAacGCc -3'
miRNA:   3'- aaGCaCGACGuC--UGCGACGCGCU--CGu -5'
10835 5' -58.6 NC_002794.1 + 93991 0.67 0.743181
Target:  5'- cUCG-GC-GCGGACGCcgGCGCcGGCGg -3'
miRNA:   3'- aAGCaCGaCGUCUGCGa-CGCGcUCGU- -5'
10835 5' -58.6 NC_002794.1 + 50454 0.67 0.733538
Target:  5'- -cCGUGCcGCAGAuCGCagagGUGCGuGCGa -3'
miRNA:   3'- aaGCACGaCGUCU-GCGa---CGCGCuCGU- -5'
10835 5' -58.6 NC_002794.1 + 83164 0.67 0.733538
Target:  5'- ----aGCUGCGGACGCUcucggucgaGCGCG-GCu -3'
miRNA:   3'- aagcaCGACGUCUGCGA---------CGCGCuCGu -5'
10835 5' -58.6 NC_002794.1 + 138958 0.68 0.72381
Target:  5'- -gCGUGCUGC-GACGCgGCGgaCGGGUu -3'
miRNA:   3'- aaGCACGACGuCUGCGaCGC--GCUCGu -5'
10835 5' -58.6 NC_002794.1 + 125079 0.68 0.714004
Target:  5'- gUUCGUGCUGCuGG-GCUccaGCGAGCu -3'
miRNA:   3'- -AAGCACGACGuCUgCGAcg-CGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 107053 0.68 0.714004
Target:  5'- gUCGgagGCgGCGGGCGCgGCGCcgccGGCAu -3'
miRNA:   3'- aAGCa--CGaCGUCUGCGaCGCGc---UCGU- -5'
10835 5' -58.6 NC_002794.1 + 48052 0.68 0.714004
Target:  5'- -gCGUGCUggGCAcGGCGCUgauggccggccaGCGgGAGCAg -3'
miRNA:   3'- aaGCACGA--CGU-CUGCGA------------CGCgCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 123677 0.68 0.684214
Target:  5'- cUCGgcccggGCUgggaGCAGGCGCgacuggcggGCGUGAGCGc -3'
miRNA:   3'- aAGCa-----CGA----CGUCUGCGa--------CGCGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.