miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10835 5' -58.6 NC_002794.1 + 57182 1.05 0.002955
Target:  5'- cUUCGUGCUGCAGACGCUGCGCGAGCAc -3'
miRNA:   3'- -AAGCACGACGUCUGCGACGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 94761 0.78 0.224437
Target:  5'- -aCGUGCUGCucgucgacgAGGCGCUGgGCGAGUu -3'
miRNA:   3'- aaGCACGACG---------UCUGCGACgCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 124646 0.73 0.413676
Target:  5'- aUgGUGCUGCAGACGgUGCGCccccacuGCGu -3'
miRNA:   3'- aAgCACGACGUCUGCgACGCGcu-----CGU- -5'
10835 5' -58.6 NC_002794.1 + 195117 0.72 0.467203
Target:  5'- cUCGUGCgcccGCGG-CGC-GCGCGGGCu -3'
miRNA:   3'- aAGCACGa---CGUCuGCGaCGCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 109382 0.71 0.5048
Target:  5'- cUCGaucUGCUGCGGAUGCUG-GCGAucGCGc -3'
miRNA:   3'- aAGC---ACGACGUCUGCGACgCGCU--CGU- -5'
10835 5' -58.6 NC_002794.1 + 114526 0.7 0.593454
Target:  5'- gUCGaGCgGCAGccgcgcgaGCUGCGCGAGCu -3'
miRNA:   3'- aAGCaCGaCGUCug------CGACGCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 116385 0.69 0.617658
Target:  5'- -gCGUGCgggucgaagacgaaGguGugGCgggGCGCGAGCAc -3'
miRNA:   3'- aaGCACGa-------------CguCugCGa--CGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 139467 0.69 0.622711
Target:  5'- gUCGUGCgccaggacgguggUGUAGAUGg-GCGCGGGCGc -3'
miRNA:   3'- aAGCACG-------------ACGUCUGCgaCGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 92658 0.69 0.66413
Target:  5'- aUCGUGCaGaaccuGGCGCUggugaGCGCGAGCu -3'
miRNA:   3'- aAGCACGaCgu---CUGCGA-----CGCGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 94477 0.68 0.674189
Target:  5'- -aCGgcgGCgGCGGACGCgGCcGCGGGCc -3'
miRNA:   3'- aaGCa--CGaCGUCUGCGaCG-CGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 123677 0.68 0.684214
Target:  5'- cUCGgcccggGCUgggaGCAGGCGCgacuggcggGCGUGAGCGc -3'
miRNA:   3'- aAGCa-----CGA----CGUCUGCGa--------CGCGCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 48052 0.68 0.714004
Target:  5'- -gCGUGCUggGCAcGGCGCUgauggccggccaGCGgGAGCAg -3'
miRNA:   3'- aaGCACGA--CGU-CUGCGA------------CGCgCUCGU- -5'
10835 5' -58.6 NC_002794.1 + 107053 0.68 0.714004
Target:  5'- gUCGgagGCgGCGGGCGCgGCGCcgccGGCAu -3'
miRNA:   3'- aAGCa--CGaCGUCUGCGaCGCGc---UCGU- -5'
10835 5' -58.6 NC_002794.1 + 125079 0.68 0.714004
Target:  5'- gUUCGUGCUGCuGG-GCUccaGCGAGCu -3'
miRNA:   3'- -AAGCACGACGuCUgCGAcg-CGCUCGu -5'
10835 5' -58.6 NC_002794.1 + 138958 0.68 0.72381
Target:  5'- -gCGUGCUGC-GACGCgGCGgaCGGGUu -3'
miRNA:   3'- aaGCACGACGuCUGCGaCGC--GCUCGu -5'
10835 5' -58.6 NC_002794.1 + 50454 0.67 0.733538
Target:  5'- -cCGUGCcGCAGAuCGCagagGUGCGuGCGa -3'
miRNA:   3'- aaGCACGaCGUCU-GCGa---CGCGCuCGU- -5'
10835 5' -58.6 NC_002794.1 + 83164 0.67 0.733538
Target:  5'- ----aGCUGCGGACGCUcucggucgaGCGCG-GCu -3'
miRNA:   3'- aagcaCGACGUCUGCGA---------CGCGCuCGu -5'
10835 5' -58.6 NC_002794.1 + 93991 0.67 0.743181
Target:  5'- cUCG-GC-GCGGACGCcgGCGCcGGCGg -3'
miRNA:   3'- aAGCaCGaCGUCUGCGa-CGCGcUCGU- -5'
10835 5' -58.6 NC_002794.1 + 58554 0.67 0.743181
Target:  5'- -gCGcGCUGCuGgcGCGCUGCGCGAacGCc -3'
miRNA:   3'- aaGCaCGACGuC--UGCGACGCGCU--CGu -5'
10835 5' -58.6 NC_002794.1 + 91333 0.67 0.752729
Target:  5'- -aCGgcGCUGgguCAGGCGCUGCGCuucggccacaccGAGCAc -3'
miRNA:   3'- aaGCa-CGAC---GUCUGCGACGCG------------CUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.