Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10835 | 5' | -58.6 | NC_002794.1 | + | 20633 | 0.67 | 0.762173 |
Target: 5'- -cCG-GCUGCcucGACgGCUgGUGCGAGCAa -3' miRNA: 3'- aaGCaCGACGu--CUG-CGA-CGCGCUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 36560 | 0.66 | 0.816169 |
Target: 5'- -cCGUccGCUGCAGacacGCGCcGC-CGAGCAg -3' miRNA: 3'- aaGCA--CGACGUC----UGCGaCGcGCUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 48052 | 0.68 | 0.714004 |
Target: 5'- -gCGUGCUggGCAcGGCGCUgauggccggccaGCGgGAGCAg -3' miRNA: 3'- aaGCACGA--CGU-CUGCGA------------CGCgCUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 50454 | 0.67 | 0.733538 |
Target: 5'- -cCGUGCcGCAGAuCGCagagGUGCGuGCGa -3' miRNA: 3'- aaGCACGaCGUCU-GCGa---CGCGCuCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 57182 | 1.05 | 0.002955 |
Target: 5'- cUUCGUGCUGCAGACGCUGCGCGAGCAc -3' miRNA: 3'- -AAGCACGACGUCUGCGACGCGCUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 57921 | 0.66 | 0.81958 |
Target: 5'- -gCGUGCUGCagaAGcucgacuucgccgacGCGCUGCGC-AGCc -3' miRNA: 3'- aaGCACGACG---UC---------------UGCGACGCGcUCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 58554 | 0.67 | 0.743181 |
Target: 5'- -gCGcGCUGCuGgcGCGCUGCGCGAacGCc -3' miRNA: 3'- aaGCaCGACGuC--UGCGACGCGCU--CGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 64085 | 0.66 | 0.83295 |
Target: 5'- -aCGUGaCcaaagucaccgUGCAGACGCgaccgGCGCGucuGCAc -3' miRNA: 3'- aaGCAC-G-----------ACGUCUGCGa----CGCGCu--CGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 83164 | 0.67 | 0.733538 |
Target: 5'- ----aGCUGCGGACGCUcucggucgaGCGCG-GCu -3' miRNA: 3'- aagcaCGACGUCUGCGA---------CGCGCuCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 90723 | 0.66 | 0.789794 |
Target: 5'- -aCGUGCUcGCGGcccuguCGCUGUGCGAcCGg -3' miRNA: 3'- aaGCACGA-CGUCu-----GCGACGCGCUcGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 91333 | 0.67 | 0.752729 |
Target: 5'- -aCGgcGCUGgguCAGGCGCUGCGCuucggccacaccGAGCAc -3' miRNA: 3'- aaGCa-CGAC---GUCUGCGACGCG------------CUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 92658 | 0.69 | 0.66413 |
Target: 5'- aUCGUGCaGaaccuGGCGCUggugaGCGCGAGCu -3' miRNA: 3'- aAGCACGaCgu---CUGCGA-----CGCGCUCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 93991 | 0.67 | 0.743181 |
Target: 5'- cUCG-GC-GCGGACGCcgGCGCcGGCGg -3' miRNA: 3'- aAGCaCGaCGUCUGCGa-CGCGcUCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 94477 | 0.68 | 0.674189 |
Target: 5'- -aCGgcgGCgGCGGACGCgGCcGCGGGCc -3' miRNA: 3'- aaGCa--CGaCGUCUGCGaCG-CGCUCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 94761 | 0.78 | 0.224437 |
Target: 5'- -aCGUGCUGCucgucgacgAGGCGCUGgGCGAGUu -3' miRNA: 3'- aaGCACGACG---------UCUGCGACgCGCUCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 101721 | 0.66 | 0.824645 |
Target: 5'- gUUCGUGgUGCAcGugGgCcaggGCGUGAGCu -3' miRNA: 3'- -AAGCACgACGU-CugC-Ga---CGCGCUCGu -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 107053 | 0.68 | 0.714004 |
Target: 5'- gUCGgagGCgGCGGGCGCgGCGCcgccGGCAu -3' miRNA: 3'- aAGCa--CGaCGUCUGCGaCGCGc---UCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 109382 | 0.71 | 0.5048 |
Target: 5'- cUCGaucUGCUGCGGAUGCUG-GCGAucGCGc -3' miRNA: 3'- aAGC---ACGACGUCUGCGACgCGCU--CGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 111193 | 0.67 | 0.770576 |
Target: 5'- cUCGaagagguUGCcGUAG-CGCUGCGCGuAGCGg -3' miRNA: 3'- aAGC-------ACGaCGUCuGCGACGCGC-UCGU- -5' |
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10835 | 5' | -58.6 | NC_002794.1 | + | 114526 | 0.7 | 0.593454 |
Target: 5'- gUCGaGCgGCAGccgcgcgaGCUGCGCGAGCu -3' miRNA: 3'- aAGCaCGaCGUCug------CGACGCGCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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