miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10837 3' -48 NC_002794.1 + 147045 0.66 0.999948
Target:  5'- aGCcgUCGGCGGCCggucuaAGGAcgGAGCc -3'
miRNA:   3'- -CGa-AGCUGCUGGaguug-UUCUa-CUCG- -5'
10837 3' -48 NC_002794.1 + 94895 0.66 0.999948
Target:  5'- gGCUgacggUCGACGuggcgacCCUgAACGAGGUGgagaGGCu -3'
miRNA:   3'- -CGA-----AGCUGCu------GGAgUUGUUCUAC----UCG- -5'
10837 3' -48 NC_002794.1 + 128093 0.66 0.999948
Target:  5'- --gUCGGCGACggggagCUCGACGGGggGcucGGCg -3'
miRNA:   3'- cgaAGCUGCUG------GAGUUGUUCuaC---UCG- -5'
10837 3' -48 NC_002794.1 + 74375 0.66 0.999948
Target:  5'- uGCUUCGgggGCGGCCggcgCGACuacacGAccGAGCg -3'
miRNA:   3'- -CGAAGC---UGCUGGa---GUUGuu---CUa-CUCG- -5'
10837 3' -48 NC_002794.1 + 118310 0.66 0.999948
Target:  5'- cGCUcgUCGucgucgucGCGACgggCGGCGAGAaGAGCa -3'
miRNA:   3'- -CGA--AGC--------UGCUGga-GUUGUUCUaCUCG- -5'
10837 3' -48 NC_002794.1 + 67514 0.66 0.999946
Target:  5'- uGCUgagguacUCGACGACCggaucCGGCu---UGAGCc -3'
miRNA:   3'- -CGA-------AGCUGCUGGa----GUUGuucuACUCG- -5'
10837 3' -48 NC_002794.1 + 184995 0.66 0.999931
Target:  5'- cGCgaagCGGCGGCCgcccacgggacUCAGCAcGGUGAccaGCu -3'
miRNA:   3'- -CGaa--GCUGCUGG-----------AGUUGUuCUACU---CG- -5'
10837 3' -48 NC_002794.1 + 42125 0.66 0.999931
Target:  5'- uGCUUCGGCGACgaguACu---UGAGCg -3'
miRNA:   3'- -CGAAGCUGCUGgaguUGuucuACUCG- -5'
10837 3' -48 NC_002794.1 + 69347 0.66 0.999931
Target:  5'- --gUCGAUGAUCUCGuuccccGCGgAGAUcGGGCg -3'
miRNA:   3'- cgaAGCUGCUGGAGU------UGU-UCUA-CUCG- -5'
10837 3' -48 NC_002794.1 + 145809 0.66 0.999931
Target:  5'- ---aCGACGccGCCgccggCGGCGAGccGAGCg -3'
miRNA:   3'- cgaaGCUGC--UGGa----GUUGUUCuaCUCG- -5'
10837 3' -48 NC_002794.1 + 184582 0.66 0.99991
Target:  5'- gGCggCGGCGGCCacgCGcggccGCGGGAUcGGCa -3'
miRNA:   3'- -CGaaGCUGCUGGa--GU-----UGUUCUAcUCG- -5'
10837 3' -48 NC_002794.1 + 111493 0.66 0.99991
Target:  5'- cGgaUCGAgGGCCagGACGAGAgaccgGAGg -3'
miRNA:   3'- -CgaAGCUgCUGGagUUGUUCUa----CUCg -5'
10837 3' -48 NC_002794.1 + 182223 0.66 0.999883
Target:  5'- gGCUcCGACGgucagGCCgCAGCAGGccaggagGAGCg -3'
miRNA:   3'- -CGAaGCUGC-----UGGaGUUGUUCua-----CUCG- -5'
10837 3' -48 NC_002794.1 + 55299 0.66 0.999883
Target:  5'- gGCggCGGCGGCgUCGcgGCGGGcgcGGGCg -3'
miRNA:   3'- -CGaaGCUGCUGgAGU--UGUUCua-CUCG- -5'
10837 3' -48 NC_002794.1 + 48242 0.66 0.999848
Target:  5'- --aUCGuuCGGCCgCAGCAGGAUcAGCc -3'
miRNA:   3'- cgaAGCu-GCUGGaGUUGUUCUAcUCG- -5'
10837 3' -48 NC_002794.1 + 95527 0.66 0.999848
Target:  5'- cGCgUCGAaGACCUCuucacgcucAGCGAGGcgcagcUGGGCg -3'
miRNA:   3'- -CGaAGCUgCUGGAG---------UUGUUCU------ACUCG- -5'
10837 3' -48 NC_002794.1 + 70878 0.67 0.999805
Target:  5'- gGCagCGGCGGcuCCUCGAgcgcCAGGucgGUGAGCa -3'
miRNA:   3'- -CGaaGCUGCU--GGAGUU----GUUC---UACUCG- -5'
10837 3' -48 NC_002794.1 + 105341 0.67 0.999805
Target:  5'- aGCgUUUGuCGAUCUcCAGCGGGGUgcaGAGCu -3'
miRNA:   3'- -CG-AAGCuGCUGGA-GUUGUUCUA---CUCG- -5'
10837 3' -48 NC_002794.1 + 94767 0.67 0.999805
Target:  5'- uGCUcgUCGACGagGCgCUgGGCGAGuucGAGCg -3'
miRNA:   3'- -CGA--AGCUGC--UG-GAgUUGUUCua-CUCG- -5'
10837 3' -48 NC_002794.1 + 65250 0.67 0.999805
Target:  5'- gGCggCGAucCGGCCUCGcCGAGcgGcGGCg -3'
miRNA:   3'- -CGaaGCU--GCUGGAGUuGUUCuaC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.