miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10837 5' -54.8 NC_002794.1 + 188144 0.66 0.958029
Target:  5'- -aGCUCUUCc---UCCAGGUcgGCCGgGu -3'
miRNA:   3'- uaCGAGAAGauguAGGUCCA--CGGCgC- -5'
10837 5' -54.8 NC_002794.1 + 113902 0.66 0.950116
Target:  5'- -cGCgg-UCUGCAggaaggccUCCAGGUcgGCCGCc -3'
miRNA:   3'- uaCGagaAGAUGU--------AGGUCCA--CGGCGc -5'
10837 5' -54.8 NC_002794.1 + 58156 0.66 0.950116
Target:  5'- cGUGCaCUUUUACcagcgCCgccaggAGGUGCCGCGc -3'
miRNA:   3'- -UACGaGAAGAUGua---GG------UCCACGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 107864 0.66 0.94756
Target:  5'- cUGCUCcaCUGCAUCgcggaggcggcgcggCGGGUGCgGCu -3'
miRNA:   3'- uACGAGaaGAUGUAG---------------GUCCACGgCGc -5'
10837 5' -54.8 NC_002794.1 + 184717 0.66 0.94581
Target:  5'- -gGCUCUUCcgagcgACAggccaacgCCAGGU-CCGCGc -3'
miRNA:   3'- uaCGAGAAGa-----UGUa-------GGUCCAcGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 114350 0.66 0.94492
Target:  5'- -gGCUCgUCcGCcgCCAGGgccggcugcaggGCCGCGu -3'
miRNA:   3'- uaCGAGaAGaUGuaGGUCCa-----------CGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 189005 0.66 0.941266
Target:  5'- -aGCUCUccaggUCgcgACAggCCAGGaGCCGCu -3'
miRNA:   3'- uaCGAGA-----AGa--UGUa-GGUCCaCGGCGc -5'
10837 5' -54.8 NC_002794.1 + 31947 0.67 0.931458
Target:  5'- -cGCUCUuguUCUGCGUCUGGuUGUCGUa -3'
miRNA:   3'- uaCGAGA---AGAUGUAGGUCcACGGCGc -5'
10837 5' -54.8 NC_002794.1 + 187044 0.67 0.920683
Target:  5'- -gGCUCgcagUCccggagcccGCGgcccgCCAGGUGCCGCa -3'
miRNA:   3'- uaCGAGa---AGa--------UGUa----GGUCCACGGCGc -5'
10837 5' -54.8 NC_002794.1 + 114588 0.67 0.908941
Target:  5'- gGUGCUCgucgcUCUGgAcgagcucuUCCAGGUGgCGCa -3'
miRNA:   3'- -UACGAGa----AGAUgU--------AGGUCCACgGCGc -5'
10837 5' -54.8 NC_002794.1 + 81218 0.67 0.908941
Target:  5'- -cGCUCUUCguCGUCCccccGG-GCCGCGc -3'
miRNA:   3'- uaCGAGAAGauGUAGGu---CCaCGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 57478 0.67 0.908941
Target:  5'- -cGCUCgUCacgcGCGaCCAGGUGCgCGCGc -3'
miRNA:   3'- uaCGAGaAGa---UGUaGGUCCACG-GCGC- -5'
10837 5' -54.8 NC_002794.1 + 117520 0.68 0.868084
Target:  5'- gGUGCgccggCgcaUCUGC-UCCAGGuUGCCGUGc -3'
miRNA:   3'- -UACGa----Ga--AGAUGuAGGUCC-ACGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 154325 0.7 0.819544
Target:  5'- -aGCggcgUCgguCGUcCCGGGUGCCGCGg -3'
miRNA:   3'- uaCGaga-AGau-GUA-GGUCCACGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 52273 0.72 0.705808
Target:  5'- -aGCcCUUCUACcUCCuGG-GCCGCGa -3'
miRNA:   3'- uaCGaGAAGAUGuAGGuCCaCGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 108028 0.73 0.644512
Target:  5'- cGUGCUCggcCUGgAauUCCGGGUGCCGUu -3'
miRNA:   3'- -UACGAGaa-GAUgU--AGGUCCACGGCGc -5'
10837 5' -54.8 NC_002794.1 + 112225 0.75 0.532351
Target:  5'- -cGCUCcaggGCGUCCAGGgccGCCGCGa -3'
miRNA:   3'- uaCGAGaagaUGUAGGUCCa--CGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 7054 0.81 0.273113
Target:  5'- -aGCUCUUCUACcuggAUCCuAGGUaGCCGCGg -3'
miRNA:   3'- uaCGAGAAGAUG----UAGG-UCCA-CGGCGC- -5'
10837 5' -54.8 NC_002794.1 + 56883 0.93 0.043916
Target:  5'- gAUG-UCUUCUACAUCCAGGUGCCGCGc -3'
miRNA:   3'- -UACgAGAAGAUGUAGGUCCACGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.