miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10838 5' -61.5 NC_002794.1 + 182060 0.66 0.777353
Target:  5'- gCGCguagGGCGCcugCG-UCCGGUCgGCCAc -3'
miRNA:   3'- -GCGagg-CCGCGa--GCaAGGCCAG-CGGU- -5'
10838 5' -61.5 NC_002794.1 + 126105 0.66 0.777353
Target:  5'- gGCuUCCGGCccugggcgccgcGCUCGUcugcgCCGGUUucugGCCGg -3'
miRNA:   3'- gCG-AGGCCG------------CGAGCAa----GGCCAG----CGGU- -5'
10838 5' -61.5 NC_002794.1 + 878 0.66 0.777353
Target:  5'- gGCggUCGGCGUgcgcgCGggCCGGgUGCCAa -3'
miRNA:   3'- gCGa-GGCCGCGa----GCaaGGCCaGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 124134 0.66 0.777353
Target:  5'- gCGuCUCCGGCGCcCGggagCGGUCuCCGc -3'
miRNA:   3'- -GC-GAGGCCGCGaGCaag-GCCAGcGGU- -5'
10838 5' -61.5 NC_002794.1 + 150075 0.66 0.776476
Target:  5'- gCGCUCUGGCcuuccugcgcuggGCggagCGUgaggCCGGagCGCCGc -3'
miRNA:   3'- -GCGAGGCCG-------------CGa---GCAa---GGCCa-GCGGU- -5'
10838 5' -61.5 NC_002794.1 + 35543 0.66 0.776476
Target:  5'- cCGCgagacCCGGCGCUCGcgCgcgcgcgUGGUgGCCc -3'
miRNA:   3'- -GCGa----GGCCGCGAGCaaG-------GCCAgCGGu -5'
10838 5' -61.5 NC_002794.1 + 121967 0.66 0.768539
Target:  5'- gCGCUCCGuGCgGCUCGgUCC---CGCCGa -3'
miRNA:   3'- -GCGAGGC-CG-CGAGCaAGGccaGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 71960 0.66 0.759618
Target:  5'- aCGUaCCGGCGCaUCag-CCGGUC-CCGg -3'
miRNA:   3'- -GCGaGGCCGCG-AGcaaGGCCAGcGGU- -5'
10838 5' -61.5 NC_002794.1 + 115190 0.66 0.750598
Target:  5'- gGUgCCGGCGgUCGagCCGGcguagCGCCu -3'
miRNA:   3'- gCGaGGCCGCgAGCaaGGCCa----GCGGu -5'
10838 5' -61.5 NC_002794.1 + 46306 0.66 0.750598
Target:  5'- aCGUUCCGaGCGCggCGgcgaCGG-CGCCGu -3'
miRNA:   3'- -GCGAGGC-CGCGa-GCaag-GCCaGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 41517 0.66 0.750598
Target:  5'- aGCUCCGGUaCUUG-UCCGG--GCCGa -3'
miRNA:   3'- gCGAGGCCGcGAGCaAGGCCagCGGU- -5'
10838 5' -61.5 NC_002794.1 + 111561 0.66 0.750598
Target:  5'- -aCUCCGGCGCcagcgCGgucacuaCGGUgGCCAg -3'
miRNA:   3'- gcGAGGCCGCGa----GCaag----GCCAgCGGU- -5'
10838 5' -61.5 NC_002794.1 + 44172 0.66 0.741484
Target:  5'- gCGCgagCGGCgGCUCGUcgacUCCGGgcgaaGCCGg -3'
miRNA:   3'- -GCGag-GCCG-CGAGCA----AGGCCag---CGGU- -5'
10838 5' -61.5 NC_002794.1 + 193799 0.66 0.741484
Target:  5'- aCGacgCCGGCGCcCGcucgUCUGG-CGCCGa -3'
miRNA:   3'- -GCga-GGCCGCGaGCa---AGGCCaGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 186091 0.66 0.741484
Target:  5'- uCGC-CgGGCGCuUCGUcgCCG-UCGCCGc -3'
miRNA:   3'- -GCGaGgCCGCG-AGCAa-GGCcAGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 84173 0.66 0.732287
Target:  5'- gGC-CCaGCGCUCGgcCCGG-CGCUc -3'
miRNA:   3'- gCGaGGcCGCGAGCaaGGCCaGCGGu -5'
10838 5' -61.5 NC_002794.1 + 136573 0.66 0.723012
Target:  5'- uGCUCgGGCGuCUCGaUCCGacucuGUCGgCAc -3'
miRNA:   3'- gCGAGgCCGC-GAGCaAGGC-----CAGCgGU- -5'
10838 5' -61.5 NC_002794.1 + 93988 0.66 0.723012
Target:  5'- gCGCU-CGGCGCggacgCCGG-CGCCGg -3'
miRNA:   3'- -GCGAgGCCGCGagcaaGGCCaGCGGU- -5'
10838 5' -61.5 NC_002794.1 + 37961 0.67 0.704263
Target:  5'- uCGCU-CGGCgGCUCGUgguacgagccgaUCgCGGUCaGCCGg -3'
miRNA:   3'- -GCGAgGCCG-CGAGCA------------AG-GCCAG-CGGU- -5'
10838 5' -61.5 NC_002794.1 + 47937 0.67 0.694804
Target:  5'- aCGCagaUCGGCGCcgcgCGUcCCGG-CGCCGg -3'
miRNA:   3'- -GCGa--GGCCGCGa---GCAaGGCCaGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.