miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 151586 0.66 0.816633
Target:  5'- gCgGCGcGCGCCGCcgccgCGGGCCcgcgguuccucggcuGAcgGCCGg -3'
miRNA:   3'- -GgUGC-CGCGGCGca---GCCCGG---------------UU--UGGC- -5'
10839 3' -61 NC_002794.1 + 138710 0.66 0.81338
Target:  5'- -gGCGGCGUggacuCGCGUCGaGCCGGcUCGa -3'
miRNA:   3'- ggUGCCGCG-----GCGCAGCcCGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 11780 0.66 0.81338
Target:  5'- cUCACGGgauCGCCGCGguguccgUGGcGCCGccGCCGc -3'
miRNA:   3'- -GGUGCC---GCGGCGCa------GCC-CGGUu-UGGC- -5'
10839 3' -61 NC_002794.1 + 102200 0.66 0.81338
Target:  5'- -gGCGGcCGCCGUGaCGGaGgcccucuucaCCGAGCCGg -3'
miRNA:   3'- ggUGCC-GCGGCGCaGCC-C----------GGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 19264 0.66 0.81338
Target:  5'- gCCGCGGCccccguGgCGCGUCuccuGGCCugGAGCCu -3'
miRNA:   3'- -GGUGCCG------CgGCGCAGc---CCGG--UUUGGc -5'
10839 3' -61 NC_002794.1 + 14594 0.66 0.81338
Target:  5'- gCCGUGGCGagCGCGcCGGGCaccgcgacgGGGCCGg -3'
miRNA:   3'- -GGUGCCGCg-GCGCaGCCCGg--------UUUGGC- -5'
10839 3' -61 NC_002794.1 + 91158 0.66 0.81338
Target:  5'- gCugGGCGCCGUGga-GGCCuucAAGCUc -3'
miRNA:   3'- gGugCCGCGGCGCagcCCGG---UUUGGc -5'
10839 3' -61 NC_002794.1 + 137380 0.66 0.81338
Target:  5'- -gGCGaGCGCCGaCG-CGGGuCCGGucuguCCGg -3'
miRNA:   3'- ggUGC-CGCGGC-GCaGCCC-GGUUu----GGC- -5'
10839 3' -61 NC_002794.1 + 110431 0.66 0.81338
Target:  5'- -gGCGGCuGUCGuCGUCGguggcggaGGCCGgcgAGCCGg -3'
miRNA:   3'- ggUGCCG-CGGC-GCAGC--------CCGGU---UUGGC- -5'
10839 3' -61 NC_002794.1 + 90458 0.66 0.81338
Target:  5'- gCUuuuCGGCgagGCCGCG-CGcGGCgGGGCCGc -3'
miRNA:   3'- -GGu--GCCG---CGGCGCaGC-CCGgUUUGGC- -5'
10839 3' -61 NC_002794.1 + 109271 0.66 0.812563
Target:  5'- aCCACGGUcuuggagcucuccGCCGaCGcgCuGGCCAAcCCGa -3'
miRNA:   3'- -GGUGCCG-------------CGGC-GCa-GcCCGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 116211 0.66 0.808456
Target:  5'- aUCACGGCcucgGCCGCG-CGGcucgagucgaugcccGCCGugcGCCGu -3'
miRNA:   3'- -GGUGCCG----CGGCGCaGCC---------------CGGUu--UGGC- -5'
10839 3' -61 NC_002794.1 + 38499 0.66 0.805145
Target:  5'- gCgGCGGCGCCG-GUCGccGCCGccuCCGc -3'
miRNA:   3'- -GgUGCCGCGGCgCAGCc-CGGUuu-GGC- -5'
10839 3' -61 NC_002794.1 + 79569 0.66 0.805145
Target:  5'- uCCugGuuccuCGgCGUGUUcGGCCAGACCGa -3'
miRNA:   3'- -GGugCc----GCgGCGCAGcCCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 112753 0.66 0.805145
Target:  5'- uCCGCGGCgGCgGgGUCGGGgUGAGgucUCGg -3'
miRNA:   3'- -GGUGCCG-CGgCgCAGCCCgGUUU---GGC- -5'
10839 3' -61 NC_002794.1 + 82649 0.66 0.805145
Target:  5'- gCCAgaaGCGCCGCGcUCGacGCCGcGCCGg -3'
miRNA:   3'- -GGUgc-CGCGGCGC-AGCc-CGGUuUGGC- -5'
10839 3' -61 NC_002794.1 + 148135 0.66 0.805145
Target:  5'- gCGCGGgGCCGCcg-GGGCgAGGgCGg -3'
miRNA:   3'- gGUGCCgCGGCGcagCCCGgUUUgGC- -5'
10839 3' -61 NC_002794.1 + 186402 0.66 0.805145
Target:  5'- gCCGCGGcCGCaccaGUCGGcGUCGAcCCGa -3'
miRNA:   3'- -GGUGCC-GCGgcg-CAGCC-CGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 188249 0.66 0.805145
Target:  5'- aCCgGCGGCgGCgGCGguagcggCGGGCCGgguAGCgGa -3'
miRNA:   3'- -GG-UGCCG-CGgCGCa------GCCCGGU---UUGgC- -5'
10839 3' -61 NC_002794.1 + 66746 0.66 0.805145
Target:  5'- -gGCGGCGgCGCGUaCGaccGCUGGACCa -3'
miRNA:   3'- ggUGCCGCgGCGCA-GCc--CGGUUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.