Results 1 - 20 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10839 | 3' | -61 | NC_002794.1 | + | 54259 | 1.09 | 0.001681 |
Target: 5'- uCCACGGCGCCGCGUCGGGCCAAACCGu -3' miRNA: 3'- -GGUGCCGCGGCGCAGCCCGGUUUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 59374 | 0.85 | 0.069197 |
Target: 5'- aCCACGGCGCCGCGccugcugCGGGCCuacGCCu -3' miRNA: 3'- -GGUGCCGCGGCGCa------GCCCGGuu-UGGc -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 153410 | 0.82 | 0.12241 |
Target: 5'- gUCGCGaGCGCCGCGcgCGGaGCCGAGCUGg -3' miRNA: 3'- -GGUGC-CGCGGCGCa-GCC-CGGUUUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 118273 | 0.81 | 0.138213 |
Target: 5'- gCgGCGGCGCCgGCGUCGGGgaCCGcGCCGg -3' miRNA: 3'- -GgUGCCGCGG-CGCAGCCC--GGUuUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 104492 | 0.81 | 0.141591 |
Target: 5'- gCCACGGCgGCCGgGUCGGGCgaGAACgGg -3' miRNA: 3'- -GGUGCCG-CGGCgCAGCCCGg-UUUGgC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 110626 | 0.8 | 0.15587 |
Target: 5'- gCCGCGGCGCCGCGgcggcggggUCGGGUUucuCCGg -3' miRNA: 3'- -GGUGCCGCGGCGC---------AGCCCGGuuuGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 21712 | 0.79 | 0.175542 |
Target: 5'- uCCACgGGCGCUGCGUCGcgaucgcgaGGCCGAAgCGg -3' miRNA: 3'- -GGUG-CCGCGGCGCAGC---------CCGGUUUgGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 185352 | 0.78 | 0.221584 |
Target: 5'- gCGCGcCGCCGCGagCGGGCCGAacGCCGc -3' miRNA: 3'- gGUGCcGCGGCGCa-GCCCGGUU--UGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 68947 | 0.78 | 0.222093 |
Target: 5'- gCCGCGGCGCCgGCGccucucccuccuccgCGGGCCGcgacGCCGg -3' miRNA: 3'- -GGUGCCGCGG-CGCa--------------GCCCGGUu---UGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 32303 | 0.77 | 0.242714 |
Target: 5'- gCCGCGGCgGCCGCG-CcGGCCGcGGCCGg -3' miRNA: 3'- -GGUGCCG-CGGCGCaGcCCGGU-UUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 181770 | 0.77 | 0.24658 |
Target: 5'- gCCgAUGGCGCCGCGccgccgcgucucguUCGGGCCuuggauccaGAACCGc -3' miRNA: 3'- -GG-UGCCGCGGCGC--------------AGCCCGG---------UUUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 111629 | 0.77 | 0.231947 |
Target: 5'- gCCGCGGcCGCCGCcgGUCGGGCgCcgcGGCCGc -3' miRNA: 3'- -GGUGCC-GCGGCG--CAGCCCG-Gu--UUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 185135 | 0.76 | 0.283695 |
Target: 5'- -gGCGGCGCCGCGUCGagaagaucGCCGAcgcguccuccGCCGg -3' miRNA: 3'- ggUGCCGCGGCGCAGCc-------CGGUU----------UGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 107067 | 0.76 | 0.283695 |
Target: 5'- gCGCGGCGCCGCcggcauGUCGGaGCCGAcggGCgGg -3' miRNA: 3'- gGUGCCGCGGCG------CAGCC-CGGUU---UGgC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 91599 | 0.76 | 0.289977 |
Target: 5'- gCCGCuGGUGCgCGCGgccgaGGGCCAcGCCGa -3' miRNA: 3'- -GGUG-CCGCG-GCGCag---CCCGGUuUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 156404 | 0.76 | 0.27752 |
Target: 5'- gC-CGGCGCCGCGgcCGcGGCCAcGGCCGg -3' miRNA: 3'- gGuGCCGCGGCGCa-GC-CCGGU-UUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 94001 | 0.76 | 0.283695 |
Target: 5'- aCGcCGGCGCCgGCGgCGGGCCGGcggguuccGCCGg -3' miRNA: 3'- gGU-GCCGCGG-CGCaGCCCGGUU--------UGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 17434 | 0.76 | 0.283695 |
Target: 5'- uCCGCGcCGCCgGCGcUCGGGCCcgcGACCGa -3' miRNA: 3'- -GGUGCcGCGG-CGC-AGCCCGGu--UUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 131195 | 0.76 | 0.283695 |
Target: 5'- gCACGGCGCCGgGgCGGcGCCGguguacauGACCGu -3' miRNA: 3'- gGUGCCGCGGCgCaGCC-CGGU--------UUGGC- -5' |
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10839 | 3' | -61 | NC_002794.1 | + | 67390 | 0.76 | 0.276909 |
Target: 5'- gCGuCGGCGCCaGCGUCGGcGCCAGcgucggcGCCa -3' miRNA: 3'- gGU-GCCGCGG-CGCAGCC-CGGUU-------UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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