miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 54259 1.09 0.001681
Target:  5'- uCCACGGCGCCGCGUCGGGCCAAACCGu -3'
miRNA:   3'- -GGUGCCGCGGCGCAGCCCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 59374 0.85 0.069197
Target:  5'- aCCACGGCGCCGCGccugcugCGGGCCuacGCCu -3'
miRNA:   3'- -GGUGCCGCGGCGCa------GCCCGGuu-UGGc -5'
10839 3' -61 NC_002794.1 + 153410 0.82 0.12241
Target:  5'- gUCGCGaGCGCCGCGcgCGGaGCCGAGCUGg -3'
miRNA:   3'- -GGUGC-CGCGGCGCa-GCC-CGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 118273 0.81 0.138213
Target:  5'- gCgGCGGCGCCgGCGUCGGGgaCCGcGCCGg -3'
miRNA:   3'- -GgUGCCGCGG-CGCAGCCC--GGUuUGGC- -5'
10839 3' -61 NC_002794.1 + 104492 0.81 0.141591
Target:  5'- gCCACGGCgGCCGgGUCGGGCgaGAACgGg -3'
miRNA:   3'- -GGUGCCG-CGGCgCAGCCCGg-UUUGgC- -5'
10839 3' -61 NC_002794.1 + 110626 0.8 0.15587
Target:  5'- gCCGCGGCGCCGCGgcggcggggUCGGGUUucuCCGg -3'
miRNA:   3'- -GGUGCCGCGGCGC---------AGCCCGGuuuGGC- -5'
10839 3' -61 NC_002794.1 + 21712 0.79 0.175542
Target:  5'- uCCACgGGCGCUGCGUCGcgaucgcgaGGCCGAAgCGg -3'
miRNA:   3'- -GGUG-CCGCGGCGCAGC---------CCGGUUUgGC- -5'
10839 3' -61 NC_002794.1 + 185352 0.78 0.221584
Target:  5'- gCGCGcCGCCGCGagCGGGCCGAacGCCGc -3'
miRNA:   3'- gGUGCcGCGGCGCa-GCCCGGUU--UGGC- -5'
10839 3' -61 NC_002794.1 + 68947 0.78 0.222093
Target:  5'- gCCGCGGCGCCgGCGccucucccuccuccgCGGGCCGcgacGCCGg -3'
miRNA:   3'- -GGUGCCGCGG-CGCa--------------GCCCGGUu---UGGC- -5'
10839 3' -61 NC_002794.1 + 111629 0.77 0.231947
Target:  5'- gCCGCGGcCGCCGCcgGUCGGGCgCcgcGGCCGc -3'
miRNA:   3'- -GGUGCC-GCGGCG--CAGCCCG-Gu--UUGGC- -5'
10839 3' -61 NC_002794.1 + 32303 0.77 0.242714
Target:  5'- gCCGCGGCgGCCGCG-CcGGCCGcGGCCGg -3'
miRNA:   3'- -GGUGCCG-CGGCGCaGcCCGGU-UUGGC- -5'
10839 3' -61 NC_002794.1 + 181770 0.77 0.24658
Target:  5'- gCCgAUGGCGCCGCGccgccgcgucucguUCGGGCCuuggauccaGAACCGc -3'
miRNA:   3'- -GG-UGCCGCGGCGC--------------AGCCCGG---------UUUGGC- -5'
10839 3' -61 NC_002794.1 + 67390 0.76 0.276909
Target:  5'- gCGuCGGCGCCaGCGUCGGcGCCAGcgucggcGCCa -3'
miRNA:   3'- gGU-GCCGCGG-CGCAGCC-CGGUU-------UGGc -5'
10839 3' -61 NC_002794.1 + 156404 0.76 0.27752
Target:  5'- gC-CGGCGCCGCGgcCGcGGCCAcGGCCGg -3'
miRNA:   3'- gGuGCCGCGGCGCa-GC-CCGGU-UUGGC- -5'
10839 3' -61 NC_002794.1 + 107067 0.76 0.283695
Target:  5'- gCGCGGCGCCGCcggcauGUCGGaGCCGAcggGCgGg -3'
miRNA:   3'- gGUGCCGCGGCG------CAGCC-CGGUU---UGgC- -5'
10839 3' -61 NC_002794.1 + 131195 0.76 0.283695
Target:  5'- gCACGGCGCCGgGgCGGcGCCGguguacauGACCGu -3'
miRNA:   3'- gGUGCCGCGGCgCaGCC-CGGU--------UUGGC- -5'
10839 3' -61 NC_002794.1 + 17434 0.76 0.283695
Target:  5'- uCCGCGcCGCCgGCGcUCGGGCCcgcGACCGa -3'
miRNA:   3'- -GGUGCcGCGG-CGC-AGCCCGGu--UUGGC- -5'
10839 3' -61 NC_002794.1 + 94001 0.76 0.283695
Target:  5'- aCGcCGGCGCCgGCGgCGGGCCGGcggguuccGCCGg -3'
miRNA:   3'- gGU-GCCGCGG-CGCaGCCCGGUU--------UGGC- -5'
10839 3' -61 NC_002794.1 + 185135 0.76 0.283695
Target:  5'- -gGCGGCGCCGCGUCGagaagaucGCCGAcgcguccuccGCCGg -3'
miRNA:   3'- ggUGCCGCGGCGCAGCc-------CGGUU----------UGGC- -5'
10839 3' -61 NC_002794.1 + 91599 0.76 0.289977
Target:  5'- gCCGCuGGUGCgCGCGgccgaGGGCCAcGCCGa -3'
miRNA:   3'- -GGUG-CCGCG-GCGCag---CCCGGUuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.