miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 147150 0.75 0.296367
Target:  5'- gCCcCGGgGCCGCGa-GGGCCAgcugGACCGa -3'
miRNA:   3'- -GGuGCCgCGGCGCagCCCGGU----UUGGC- -5'
10839 3' -61 NC_002794.1 + 90932 0.75 0.309476
Target:  5'- aCCACGGCGaCGUGggCGGGCUGugcGCCGa -3'
miRNA:   3'- -GGUGCCGCgGCGCa-GCCCGGUu--UGGC- -5'
10839 3' -61 NC_002794.1 + 141695 0.75 0.309476
Target:  5'- aCGCGGU-CC-CGUCGuGGCCGAACCGg -3'
miRNA:   3'- gGUGCCGcGGcGCAGC-CCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 187901 0.75 0.316194
Target:  5'- gCGCGGUGCCGCucgcccGcCGGGCCccGCCGc -3'
miRNA:   3'- gGUGCCGCGGCG------CaGCCCGGuuUGGC- -5'
10839 3' -61 NC_002794.1 + 55303 0.75 0.323022
Target:  5'- gCgGCGGCGUCGCGgCGGGCgCGGGCgGc -3'
miRNA:   3'- -GgUGCCGCGGCGCaGCCCG-GUUUGgC- -5'
10839 3' -61 NC_002794.1 + 77939 0.75 0.323022
Target:  5'- cCCGCcggaGGCGCCGCGaUCGccgccgucGCCGAGCCGa -3'
miRNA:   3'- -GGUG----CCGCGGCGC-AGCc-------CGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 190702 0.75 0.329958
Target:  5'- uCC-CGGCGCaGCGUCGGGUUcuccAGCCGg -3'
miRNA:   3'- -GGuGCCGCGgCGCAGCCCGGu---UUGGC- -5'
10839 3' -61 NC_002794.1 + 14537 0.75 0.332764
Target:  5'- gCCACGGCGCucucgcccccgucgaCGCG-CGGGaggCGAGCCGg -3'
miRNA:   3'- -GGUGCCGCG---------------GCGCaGCCCg--GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 12236 0.74 0.337004
Target:  5'- cCgGCGGCGCCGUccgCGGcGCCGAuCCGg -3'
miRNA:   3'- -GgUGCCGCGGCGca-GCC-CGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 115322 0.74 0.337004
Target:  5'- gCACGGuCGCCGCGgcgucCGGGCCGcucGGCaCGu -3'
miRNA:   3'- gGUGCC-GCGGCGCa----GCCCGGU---UUG-GC- -5'
10839 3' -61 NC_002794.1 + 126114 0.74 0.337004
Target:  5'- cCCugGGCGCCGCGcUCGucugcGCCGguuucuGGCCGg -3'
miRNA:   3'- -GGugCCGCGGCGC-AGCc----CGGU------UUGGC- -5'
10839 3' -61 NC_002794.1 + 80408 0.74 0.34416
Target:  5'- gCCGCGGCccagGUgGCGcCGGGCgGGGCCGc -3'
miRNA:   3'- -GGUGCCG----CGgCGCaGCCCGgUUUGGC- -5'
10839 3' -61 NC_002794.1 + 179990 0.74 0.34416
Target:  5'- -gGCGGUgGCCGCGacggCGGGCCcGGCCa -3'
miRNA:   3'- ggUGCCG-CGGCGCa---GCCCGGuUUGGc -5'
10839 3' -61 NC_002794.1 + 21970 0.74 0.349233
Target:  5'- cCCGCGGCGCCGUcgucuccgcgacccGUCGccGGC-AAGCCGg -3'
miRNA:   3'- -GGUGCCGCGGCG--------------CAGC--CCGgUUUGGC- -5'
10839 3' -61 NC_002794.1 + 41302 0.74 0.351424
Target:  5'- aCGCGG-GCCGCGUgGGGUCu--CCGa -3'
miRNA:   3'- gGUGCCgCGGCGCAgCCCGGuuuGGC- -5'
10839 3' -61 NC_002794.1 + 96891 0.74 0.358795
Target:  5'- gCUACGGgGCagGCGUCGGGCgGAgguggcggaggcGCCGg -3'
miRNA:   3'- -GGUGCCgCGg-CGCAGCCCGgUU------------UGGC- -5'
10839 3' -61 NC_002794.1 + 115924 0.74 0.358795
Target:  5'- aCuuGGCGCgGCGgCGGGCCGGcccGCCGc -3'
miRNA:   3'- gGugCCGCGgCGCaGCCCGGUU---UGGC- -5'
10839 3' -61 NC_002794.1 + 117384 0.74 0.366275
Target:  5'- gCACGGuCGCgGCGaagCGGGCCuccACCGu -3'
miRNA:   3'- gGUGCC-GCGgCGCa--GCCCGGuu-UGGC- -5'
10839 3' -61 NC_002794.1 + 50792 0.74 0.366275
Target:  5'- -gGCGGCGCCuccucgcccgGCGUCGGGCgCu--CCGg -3'
miRNA:   3'- ggUGCCGCGG----------CGCAGCCCG-GuuuGGC- -5'
10839 3' -61 NC_002794.1 + 44167 0.74 0.374625
Target:  5'- gCACGGCGCgaGCGgcggcucgucgacucCGGGCgAAGCCGg -3'
miRNA:   3'- gGUGCCGCGg-CGCa--------------GCCCGgUUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.