miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 188249 0.66 0.805145
Target:  5'- aCCgGCGGCgGCgGCGguagcggCGGGCCGgguAGCgGa -3'
miRNA:   3'- -GG-UGCCG-CGgCGCa------GCCCGGU---UUGgC- -5'
10839 3' -61 NC_002794.1 + 16353 0.66 0.805145
Target:  5'- aCGuCGGCGCCacccgcacccGCGUgcacggcggcCGGGuCCGAACCc -3'
miRNA:   3'- gGU-GCCGCGG----------CGCA----------GCCC-GGUUUGGc -5'
10839 3' -61 NC_002794.1 + 137339 0.66 0.804314
Target:  5'- uCCGCGGacggcuCGgCGuCGUCGGGgucuucuUCGAGCCGg -3'
miRNA:   3'- -GGUGCC------GCgGC-GCAGCCC-------GGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 92449 0.66 0.800137
Target:  5'- -uGCGGgGCCgcgcggacuucaugaGCGcgcucUCGGGCCucAACCGg -3'
miRNA:   3'- ggUGCCgCGG---------------CGC-----AGCCCGGu-UUGGC- -5'
10839 3' -61 NC_002794.1 + 14453 0.66 0.796772
Target:  5'- uCCGCgGGCGaCCGUGUCGagcGGCgc-GCCGc -3'
miRNA:   3'- -GGUG-CCGC-GGCGCAGC---CCGguuUGGC- -5'
10839 3' -61 NC_002794.1 + 46245 0.66 0.796772
Target:  5'- cCgGCGGCucguCCGCuuccUCGGGCCGucGACCc -3'
miRNA:   3'- -GgUGCCGc---GGCGc---AGCCCGGU--UUGGc -5'
10839 3' -61 NC_002794.1 + 90657 0.66 0.796772
Target:  5'- aCACGcucGCGCCGU-UgGGGCC-GGCCGc -3'
miRNA:   3'- gGUGC---CGCGGCGcAgCCCGGuUUGGC- -5'
10839 3' -61 NC_002794.1 + 95841 0.66 0.796772
Target:  5'- gCgGCGGCgGCCGgGgaggcggCGGG-CGGGCCGu -3'
miRNA:   3'- -GgUGCCG-CGGCgCa------GCCCgGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 82801 0.66 0.796772
Target:  5'- uCCACGcGCGCCGCGaccCGcGGCUc-GCuCGa -3'
miRNA:   3'- -GGUGC-CGCGGCGCa--GC-CCGGuuUG-GC- -5'
10839 3' -61 NC_002794.1 + 145850 0.66 0.796772
Target:  5'- gCCACGcucgacgaGCCGCcgaGGGCCGcGACCGg -3'
miRNA:   3'- -GGUGCcg------CGGCGcagCCCGGU-UUGGC- -5'
10839 3' -61 NC_002794.1 + 86170 0.66 0.796772
Target:  5'- cCCGacCGGaUGCCc---CGGGCCGAGCCGg -3'
miRNA:   3'- -GGU--GCC-GCGGcgcaGCCCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 95600 0.66 0.796772
Target:  5'- aCGCGGCGCCggaGCGcaUCGuGGaCCugauGACCu -3'
miRNA:   3'- gGUGCCGCGG---CGC--AGC-CC-GGu---UUGGc -5'
10839 3' -61 NC_002794.1 + 116892 0.66 0.796772
Target:  5'- gCGcCGGCGCCGUcUCcggcGGCCGGuCCGg -3'
miRNA:   3'- gGU-GCCGCGGCGcAGc---CCGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 108886 0.66 0.796772
Target:  5'- uCgGCGuGCGCgGUGUacgaCGGcGUCAAACCGu -3'
miRNA:   3'- -GgUGC-CGCGgCGCA----GCC-CGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 140276 0.66 0.796772
Target:  5'- gCCGCGaUGaCCGCGUuuuUGGGCCucucGGCCa -3'
miRNA:   3'- -GGUGCcGC-GGCGCA---GCCCGGu---UUGGc -5'
10839 3' -61 NC_002794.1 + 187946 0.66 0.796772
Target:  5'- aCGCGuGCGCgCGCGagcgCGGGaCCucgggAGGCCGc -3'
miRNA:   3'- gGUGC-CGCG-GCGCa---GCCC-GG-----UUUGGC- -5'
10839 3' -61 NC_002794.1 + 130147 0.66 0.796772
Target:  5'- gCGCGGCGCgaGCG-CGGGaUCAcgcgcgcgagAGCCGc -3'
miRNA:   3'- gGUGCCGCGg-CGCaGCCC-GGU----------UUGGC- -5'
10839 3' -61 NC_002794.1 + 90207 0.66 0.796772
Target:  5'- cCCGCGccuccgccCGCCGCGcCGGaGCCccGCCu -3'
miRNA:   3'- -GGUGCc-------GCGGCGCaGCC-CGGuuUGGc -5'
10839 3' -61 NC_002794.1 + 144898 0.66 0.796772
Target:  5'- aCGCucGCGCCGC--UGGGCCccGCCGc -3'
miRNA:   3'- gGUGc-CGCGGCGcaGCCCGGuuUGGC- -5'
10839 3' -61 NC_002794.1 + 22601 0.66 0.795928
Target:  5'- gCACGGUcgggacgcucgaGCCGa-UCGGGCCGcucgaggcgcucgGACCGc -3'
miRNA:   3'- gGUGCCG------------CGGCgcAGCCCGGU-------------UUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.