miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 13792 0.66 0.78827
Target:  5'- gCUcCGGcCGUcuuCGCGaCGGGCCcGGCCGg -3'
miRNA:   3'- -GGuGCC-GCG---GCGCaGCCCGGuUUGGC- -5'
10839 3' -61 NC_002794.1 + 41202 0.66 0.78827
Target:  5'- gUCACGGCGCUGCuGcCaccGGCCu--CCGg -3'
miRNA:   3'- -GGUGCCGCGGCG-CaGc--CCGGuuuGGC- -5'
10839 3' -61 NC_002794.1 + 110542 0.66 0.78827
Target:  5'- aCGCGGCGacgacgugcuCCGCGUCGucGCCGucgucGAUCGg -3'
miRNA:   3'- gGUGCCGC----------GGCGCAGCc-CGGU-----UUGGC- -5'
10839 3' -61 NC_002794.1 + 150343 0.66 0.78827
Target:  5'- gCACGGCuGUCugcuCGUCGcGGCCGAgaACCu -3'
miRNA:   3'- gGUGCCG-CGGc---GCAGC-CCGGUU--UGGc -5'
10839 3' -61 NC_002794.1 + 23949 0.66 0.785695
Target:  5'- gCCGCGGCgcacuuggcuccgaGCCaGCGgCGaGGCCGGcgccACCGu -3'
miRNA:   3'- -GGUGCCG--------------CGG-CGCaGC-CCGGUU----UGGC- -5'
10839 3' -61 NC_002794.1 + 53072 0.66 0.779644
Target:  5'- gCCGCGcCGCCagcucGCGgcacCGGGCCAacagGACCc -3'
miRNA:   3'- -GGUGCcGCGG-----CGCa---GCCCGGU----UUGGc -5'
10839 3' -61 NC_002794.1 + 115990 0.66 0.779644
Target:  5'- -aGCGGCGCCGCGgagacCGcGGa--GACCGc -3'
miRNA:   3'- ggUGCCGCGGCGCa----GC-CCgguUUGGC- -5'
10839 3' -61 NC_002794.1 + 94217 0.66 0.779644
Target:  5'- -gACGGUgGCgGCGaCGGGCgggCGGGCCGg -3'
miRNA:   3'- ggUGCCG-CGgCGCaGCCCG---GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 12369 0.66 0.779644
Target:  5'- aCCuCGGCgugcucgccuGCCGCGcUCGccuGGCCGAcaACCGc -3'
miRNA:   3'- -GGuGCCG----------CGGCGC-AGC---CCGGUU--UGGC- -5'
10839 3' -61 NC_002794.1 + 121773 0.66 0.779644
Target:  5'- cCCGaGGCGCCGCcgaUCcccccGGCCAccgcGACCGg -3'
miRNA:   3'- -GGUgCCGCGGCGc--AGc----CCGGU----UUGGC- -5'
10839 3' -61 NC_002794.1 + 23857 0.66 0.779644
Target:  5'- -aACGGCG-CGCacCGGGCuuCAAACCGg -3'
miRNA:   3'- ggUGCCGCgGCGcaGCCCG--GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 160006 0.66 0.779644
Target:  5'- cUCGCGGUgcgcagaugGCCgGUGUCGGaGUCcAGCCGa -3'
miRNA:   3'- -GGUGCCG---------CGG-CGCAGCC-CGGuUUGGC- -5'
10839 3' -61 NC_002794.1 + 72912 0.66 0.778774
Target:  5'- gUCGCGcucgcCGCCGcCGUCGGaGCCGGcguccgcgcgcccACCGg -3'
miRNA:   3'- -GGUGCc----GCGGC-GCAGCC-CGGUU-------------UGGC- -5'
10839 3' -61 NC_002794.1 + 141571 0.66 0.774412
Target:  5'- gCCGCGGCcuccgugaucaugacGcCCGCGUcgcCGGGCgGcucggcGACCGg -3'
miRNA:   3'- -GGUGCCG---------------C-GGCGCA---GCCCGgU------UUGGC- -5'
10839 3' -61 NC_002794.1 + 59105 0.66 0.770902
Target:  5'- aCCGCGaGCcCUuCGUCGcGGCCAccgaGGCCGa -3'
miRNA:   3'- -GGUGC-CGcGGcGCAGC-CCGGU----UUGGC- -5'
10839 3' -61 NC_002794.1 + 134569 0.66 0.770902
Target:  5'- cCCGcCGGCGCagaagGUGcuagaggaccUCGGGCCGAcuCCGg -3'
miRNA:   3'- -GGU-GCCGCGg----CGC----------AGCCCGGUUu-GGC- -5'
10839 3' -61 NC_002794.1 + 149696 0.66 0.770902
Target:  5'- gCCGCGGgggcCGCCugGCGggUGGGCCGccuGCCu -3'
miRNA:   3'- -GGUGCC----GCGG--CGCa-GCCCGGUu--UGGc -5'
10839 3' -61 NC_002794.1 + 189557 0.66 0.770902
Target:  5'- aCAUGGCGgucCCGCucgGUCGGccggcCCGGGCCGg -3'
miRNA:   3'- gGUGCCGC---GGCG---CAGCCc----GGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 78009 0.66 0.770902
Target:  5'- cCgGCGGCGgCGcCGUCGGGagaaCGcccGCCGc -3'
miRNA:   3'- -GgUGCCGCgGC-GCAGCCCg---GUu--UGGC- -5'
10839 3' -61 NC_002794.1 + 6364 0.66 0.770902
Target:  5'- aCAUGGUGUCGCgGUCccuGGCCcugcGCCGg -3'
miRNA:   3'- gGUGCCGCGGCG-CAGc--CCGGuu--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.