miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 292 0.68 0.659685
Target:  5'- cCCugGcGCGCCGaaCGcCGGGCCc-GCCc -3'
miRNA:   3'- -GGugC-CGCGGC--GCaGCCCGGuuUGGc -5'
10839 3' -61 NC_002794.1 + 883 0.7 0.583159
Target:  5'- --uCGGCGUgCGCG-CGGGCCGGguGCCa -3'
miRNA:   3'- gguGCCGCG-GCGCaGCCCGGUU--UGGc -5'
10839 3' -61 NC_002794.1 + 6364 0.66 0.770902
Target:  5'- aCAUGGUGUCGCgGUCccuGGCCcugcGCCGg -3'
miRNA:   3'- gGUGCCGCGGCG-CAGc--CCGGuu--UGGC- -5'
10839 3' -61 NC_002794.1 + 10334 0.72 0.463989
Target:  5'- gUCGuCGGCGCCGCGacCGGGUgaCGGACUGc -3'
miRNA:   3'- -GGU-GCCGCGGCGCa-GCCCG--GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 11780 0.66 0.81338
Target:  5'- cUCACGGgauCGCCGCGguguccgUGGcGCCGccGCCGc -3'
miRNA:   3'- -GGUGCC---GCGGCGCa------GCC-CGGUu-UGGC- -5'
10839 3' -61 NC_002794.1 + 12236 0.74 0.337004
Target:  5'- cCgGCGGCGCCGUccgCGGcGCCGAuCCGg -3'
miRNA:   3'- -GgUGCCGCGGCGca-GCC-CGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 12369 0.66 0.779644
Target:  5'- aCCuCGGCgugcucgccuGCCGCGcUCGccuGGCCGAcaACCGc -3'
miRNA:   3'- -GGuGCCG----------CGGCGC-AGC---CCGGUU--UGGC- -5'
10839 3' -61 NC_002794.1 + 12602 0.67 0.725713
Target:  5'- cCCACGcuGCGCCaccagcGCGUCugGGGCCGcuUCGa -3'
miRNA:   3'- -GGUGC--CGCGG------CGCAG--CCCGGUuuGGC- -5'
10839 3' -61 NC_002794.1 + 13130 0.7 0.583159
Target:  5'- gCGCGGCucGCuCGCG-CGGGUCGucGCCGu -3'
miRNA:   3'- gGUGCCG--CG-GCGCaGCCCGGUu-UGGC- -5'
10839 3' -61 NC_002794.1 + 13792 0.66 0.78827
Target:  5'- gCUcCGGcCGUcuuCGCGaCGGGCCcGGCCGg -3'
miRNA:   3'- -GGuGCC-GCG---GCGCaGCCCGGuUUGGC- -5'
10839 3' -61 NC_002794.1 + 14453 0.66 0.796772
Target:  5'- uCCGCgGGCGaCCGUGUCGagcGGCgc-GCCGc -3'
miRNA:   3'- -GGUG-CCGC-GGCGCAGC---CCGguuUGGC- -5'
10839 3' -61 NC_002794.1 + 14537 0.75 0.332764
Target:  5'- gCCACGGCGCucucgcccccgucgaCGCG-CGGGaggCGAGCCGg -3'
miRNA:   3'- -GGUGCCGCG---------------GCGCaGCCCg--GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 14594 0.66 0.81338
Target:  5'- gCCGUGGCGagCGCGcCGGGCaccgcgacgGGGCCGg -3'
miRNA:   3'- -GGUGCCGCg-GCGCaGCCCGg--------UUUGGC- -5'
10839 3' -61 NC_002794.1 + 14651 0.67 0.725713
Target:  5'- aCGcCGGCGCCGCGgcgUCGGuCCGAcUCGc -3'
miRNA:   3'- gGU-GCCGCGGCGC---AGCCcGGUUuGGC- -5'
10839 3' -61 NC_002794.1 + 16353 0.66 0.805145
Target:  5'- aCGuCGGCGCCacccgcacccGCGUgcacggcggcCGGGuCCGAACCc -3'
miRNA:   3'- gGU-GCCGCGG----------CGCA----------GCCC-GGUUUGGc -5'
10839 3' -61 NC_002794.1 + 16909 0.71 0.508545
Target:  5'- gCCGCGauccgaGCCGCcgacugucGUCGGcGCCGAGCCGc -3'
miRNA:   3'- -GGUGCcg----CGGCG--------CAGCC-CGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 17434 0.76 0.283695
Target:  5'- uCCGCGcCGCCgGCGcUCGGGCCcgcGACCGa -3'
miRNA:   3'- -GGUGCcGCGG-CGC-AGCCCGGu--UUGGC- -5'
10839 3' -61 NC_002794.1 + 18255 0.72 0.455322
Target:  5'- gCCGacCGGCGaCCGCGagaugcgCGGcGCCGAGCCu -3'
miRNA:   3'- -GGU--GCCGC-GGCGCa------GCC-CGGUUUGGc -5'
10839 3' -61 NC_002794.1 + 18701 0.71 0.517677
Target:  5'- gCACGGCGgCGgcgguccggaCGUCGGaGCCGAcgaGCCGc -3'
miRNA:   3'- gGUGCCGCgGC----------GCAGCC-CGGUU---UGGC- -5'
10839 3' -61 NC_002794.1 + 19264 0.66 0.81338
Target:  5'- gCCGCGGCccccguGgCGCGUCuccuGGCCugGAGCCu -3'
miRNA:   3'- -GGUGCCG------CgGCGCAGc---CCGG--UUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.