miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10839 3' -61 NC_002794.1 + 19534 0.68 0.659685
Target:  5'- gCGCGGCGCgGCccGcCGGuGUCGGACCc -3'
miRNA:   3'- gGUGCCGCGgCG--CaGCC-CGGUUUGGc -5'
10839 3' -61 NC_002794.1 + 20369 0.67 0.734923
Target:  5'- aCCACcuGCGCCGgauCGUCGacgcggugcGGCgGGACCGg -3'
miRNA:   3'- -GGUGc-CGCGGC---GCAGC---------CCGgUUUGGC- -5'
10839 3' -61 NC_002794.1 + 21712 0.79 0.175542
Target:  5'- uCCACgGGCGCUGCGUCGcgaucgcgaGGCCGAAgCGg -3'
miRNA:   3'- -GGUG-CCGCGGCGCAGC---------CCGGUUUgGC- -5'
10839 3' -61 NC_002794.1 + 21939 0.72 0.438254
Target:  5'- gCGCGGCGCU-CGUCGaaGGCCGucGGCCGc -3'
miRNA:   3'- gGUGCCGCGGcGCAGC--CCGGU--UUGGC- -5'
10839 3' -61 NC_002794.1 + 21970 0.74 0.349233
Target:  5'- cCCGCGGCGCCGUcgucuccgcgacccGUCGccGGC-AAGCCGg -3'
miRNA:   3'- -GGUGCCGCGGCG--------------CAGC--CCGgUUUGGC- -5'
10839 3' -61 NC_002794.1 + 22601 0.66 0.795928
Target:  5'- gCACGGUcgggacgcucgaGCCGa-UCGGGCCGcucgaggcgcucgGACCGc -3'
miRNA:   3'- gGUGCCG------------CGGCgcAGCCCGGU-------------UUGGC- -5'
10839 3' -61 NC_002794.1 + 22910 0.73 0.38935
Target:  5'- aCgGCGGCGaCCGCGgcc-GCCAAACCGg -3'
miRNA:   3'- -GgUGCCGC-GGCGCagccCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 22940 0.67 0.716433
Target:  5'- cCCAuCGGCugGCCGa--CGGGCCGGcGCCGu -3'
miRNA:   3'- -GGU-GCCG--CGGCgcaGCCCGGUU-UGGC- -5'
10839 3' -61 NC_002794.1 + 23488 0.68 0.69769
Target:  5'- gCCAUGaucGCGCCGcCGUCucccGGCCAAcggGCCa -3'
miRNA:   3'- -GGUGC---CGCGGC-GCAGc---CCGGUU---UGGc -5'
10839 3' -61 NC_002794.1 + 23857 0.66 0.779644
Target:  5'- -aACGGCG-CGCacCGGGCuuCAAACCGg -3'
miRNA:   3'- ggUGCCGCgGCGcaGCCCG--GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 23949 0.66 0.785695
Target:  5'- gCCGCGGCgcacuuggcuccgaGCCaGCGgCGaGGCCGGcgccACCGu -3'
miRNA:   3'- -GGUGCCG--------------CGG-CGCaGC-CCGGUU----UGGC- -5'
10839 3' -61 NC_002794.1 + 30231 0.68 0.678755
Target:  5'- gUACGGCaGCCGCaUCGGGUUcagguucaugauGAGCUGg -3'
miRNA:   3'- gGUGCCG-CGGCGcAGCCCGG------------UUUGGC- -5'
10839 3' -61 NC_002794.1 + 32303 0.77 0.242714
Target:  5'- gCCGCGGCgGCCGCG-CcGGCCGcGGCCGg -3'
miRNA:   3'- -GGUGCCG-CGGCGCaGcCCGGU-UUGGC- -5'
10839 3' -61 NC_002794.1 + 32582 0.72 0.438254
Target:  5'- gCgGCGGUGCCGgGgccgGGGCCgGGGCCGg -3'
miRNA:   3'- -GgUGCCGCGGCgCag--CCCGG-UUUGGC- -5'
10839 3' -61 NC_002794.1 + 32658 0.68 0.659685
Target:  5'- gCgACGGCGCCGUccccGUCGuccGCCA-ACCGu -3'
miRNA:   3'- -GgUGCCGCGGCG----CAGCc--CGGUuUGGC- -5'
10839 3' -61 NC_002794.1 + 32834 0.66 0.770902
Target:  5'- cUCGCGGCcgGCUcaucgguaGCGgcaGcGGCCGAGCCGg -3'
miRNA:   3'- -GGUGCCG--CGG--------CGCag-C-CCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 34079 0.71 0.526873
Target:  5'- cCCGcCGGCgGCCGggcagcCGUCGGGCggccCGGACCGc -3'
miRNA:   3'- -GGU-GCCG-CGGC------GCAGCCCG----GUUUGGC- -5'
10839 3' -61 NC_002794.1 + 34714 0.68 0.659685
Target:  5'- cCCGcCGGCGCCacgagGCG-CGGGC--GGCCGc -3'
miRNA:   3'- -GGU-GCCGCGG-----CGCaGCCCGguUUGGC- -5'
10839 3' -61 NC_002794.1 + 34768 0.73 0.396455
Target:  5'- aCGCGGCacgGCCGCccgcgccagccgaGUC-GGCCGAACCGg -3'
miRNA:   3'- gGUGCCG---CGGCG-------------CAGcCCGGUUUGGC- -5'
10839 3' -61 NC_002794.1 + 34866 0.69 0.630951
Target:  5'- gCCGCgGGCGCCGCGgacgccgCGaacGCgGAACCa -3'
miRNA:   3'- -GGUG-CCGCGGCGCa------GCc--CGgUUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.